KEGG   Sphaerochaeta globosa: SpiBuddy_1236
Entry
SpiBuddy_1236     CDS       T01439                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sbu  Sphaerochaeta globosa
Pathway
sbu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sbu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SpiBuddy_1236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbu03400]
    SpiBuddy_1236
Enzymes [BR:sbu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SpiBuddy_1236
DNA repair and recombination proteins [BR:sbu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SpiBuddy_1236
SSDB
Motif
Pfam: DEAD TRCF Helicase_C CarD_TRCF_RID UvrB_inter ResIII RecG_dom3_C
Other DBs
NCBI-ProteinID: ADY13061
UniProt: F0RYS5
Position
1325655..1328927
AA seq 1090 aa
MQTPISTLVQSYIKTSSAYKVYGAQTNHIHIHGLEGYPLAQFLRLLSRKQKGRVWAVCPT
EESALQLLKDSGFCGDGAASSNGEGRMVYLPSNGRKLYTPFNADNVEYDQLSRLMQIQEL
KEGLVITHLRPFVSPLVSPETLSSSSLTIKVGDAFESSSFSQLLTNAGYVHTVSTSAMGE
YSLRGEVLDIFPYESEYPYRIYADWDTVGKIARYNPITQESIGTVGKLVLSLVDATGEMA
TSSVGEYLADSDLFCFIGDQRLATSFHSLQIEAKALYRQAFLQDREAIKPDALLFDFPAF
QKKCRYSLTVFDIVGQGQDVYRFDIEGPRSYFGNFTLLKEDLKSLEKQGWNVVVFTENQL
QKQRLMQMLSAFPFLGWEDRAISGGFAIPSLKVVAICEHEIFGRRRQVVKTLQHTQSSPL
DSFVDLNEGDYVVHVNYGVGQFVKIDRVSSFDRERDFIKIAYADNEMLYVPIEQANLVQR
YIGSDTGLPKKDKLGGQGWENKKAKARKNAEDLAKHLITLYAKRKNSIGYAFPKDTDWQL
QFEASFPFDETADQLSCIEDIKDDMEKPIVMDRLVCGDVGYGKTEIAFRAVFKAVMGGKQ
VAFLAPTTILAEQHYQNFLKRLGTFPVRCAQLSRIVTKKEQKQTLLALAEGKVDVLFGTH
RILQKDIMYRDLGLLVVDEEQRFGVKDKERIKTLRASIDSLSLSATPIPRTLYMSLLKIR
DMSLLATPPIARRPIETYIGEYNEQTIVKAIRDEVERKGQVFFLHNRIESQDEVVFQLTK
LLPDVIIESAHGQMDSTKLEDTMRRFIHEGIQVLVSTTIIENGIDIPNVNTIIIDRADRY
GLSQLYQLRGRVGRNDSQAYAYLFYPQGSALSEIALKRLKIISEHTELGSGFKVAMKDME
LRGTGNLLGREQSGHLATVGLDMYIRILDEAIRDLQNVGVKDEEREVFLELDYTGFIPDT
YIKAPSVKFDIYRKISSIVNDEQLQGLASELSDRFGPPPVEVANLLFIAEIKIICRKLSI
IHLTDRKGVVAVEFGKVADLNVNKVMNLISLSNKTVWLDMRRMNVMYLKTDAVSLKDKAL
FLMEKLQRLV
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgcaaacgccaatttccacccttgtccaatcgtatatcaaaaccagtagtgcatacaag
gtatatggggcacagaccaaccacatccacatccacggacttgagggctatccgttggcc
caattcctcaggttgctcagtcgcaaacaaaaaggacgggtctgggcagtttgtcctact
gaagagagcgccctgcaactgctcaaagacagcggcttttgtggcgatggtgctgcctct
tccaatggcgaaggccgaatggtctatttacccagtaatgggagaaaactatacacccct
ttcaatgccgacaatgtcgagtatgaccagctcagtcgcctgatgcagattcaggagttg
aaagagggactggtcattacccatctcaggccgtttgtatcacctttggtcagtcccgaa
accttgagcagctcatcgctgaccatcaaggttggggatgcttttgagagctcatccttt
tcccaattgcttaccaatgcaggctatgtccatacggtttccacctctgcgatgggagaa
tattctttgcgcggcgaagtgttggatattttcccgtatgaaagcgagtacccgtataga
atctatgccgactgggataccgttggaaaaattgctcggtacaaccccataacccaggag
agtatcgggactgttggaaagctggtcctgtccttggtcgatgcaaccggtgaaatggct
acctcttcggtcggggagtatcttgctgattccgacctgttttgcttcattggtgaccaa
agactggcaacgagttttcacagcctgcagatagaggcaaaagccttgtatcggcaggct
ttccttcaagatcgggaagcaataaaacccgatgcacttctctttgattttcctgctttt
caaaagaagtgccggtattcgttgacagttttcgacattgtcggccaaggccaggatgtc
tatcggttcgatattgagggaccgcgctcctattttggaaactttaccttgctcaaggaa
gacctgaaaagtttggagaaacaaggctggaatgtggttgtctttacagaaaatcaactg
cagaaacagcgtctgatgcagatgctcagtgcttttcctttcctcgggtgggaagatcgt
gcaatttccggtgggtttgccatcccttcgttgaaagtggttgccatttgcgagcatgag
atttttgggcggcggcgtcaggttgtcaaaacgttgcagcacacccagtcttcgcccctg
gactcttttgtcgacttgaatgaaggcgattatgtcgtacatgtcaactacggggtgggg
cagtttgtaaagatcgatcgcgtatcgagtttcgatcgcgaacgtgacttcataaaaatt
gcgtatgcagacaatgaaatgctctatgtccccatcgagcaggccaacttggtccagcgg
tatatcggcagcgatacgggcctgccgaaaaaagacaagctcgggggccaagggtgggag
aacaagaaagccaaggcccgcaagaacgccgaggatttggccaaacatcttatcaccctc
tatgccaaacgcaagaacagcatcggatatgccttccccaaggacaccgattggcagttg
cagtttgaagcttccttccccttcgatgagactgcagaccaactgtcctgcatcgaggat
atcaaggatgacatggaaaaacccatcgtcatggatcgcctcgtctgcggggatgtgggg
tatgggaaaacggaaattgccttccgtgcagtattcaaggcggtaatgggtggcaagcag
gtggcatttcttgcaccgactaccattttggcagaacagcactatcagaattttttgaaa
cgtctgggtacctttcctgtccgttgtgcacagttatcccgtattgtcaccaaaaaggag
caaaaacagacactcttggcattggccgagggtaaggtggatgtcctgttcggtacccat
aggattttgcagaaagacatcatgtaccgtgatttgggacttttggttgtagatgaggaa
cagcgtttcggtgtcaaggacaaggaacggatcaagacactcagggcgagcatcgattca
ttgtcactcagtgcaactcctattccccgcaccttatacatgtccttgcttaaaattcgt
gacatgtccctgcttgccacacccccgattgcacgaagaccgatagaaacgtacatcgga
gagtacaatgaacagactattgttaaagccatccgagacgaggttgaacgcaaaggccag
gtattcttcctgcacaatcgaatcgagagccaggacgaggtggttttccagctgaccaag
ctattgcctgatgtcattatcgagagtgcccacggccagatggatagcaccaaacttgag
gataccatgcgccggttcattcatgaaggaatccaagtcctggtctccaccaccatcatc
gaaaacggtatcgacatccccaatgtaaacaccatcatcattgaccgtgccgaccggtat
ggactcagccagctctatcagctgcgcgggcgggtggggcgcaacgacagtcaggcgtat
gcgtacctgttttacccgcaggggagcgccctcagtgaaattgcattgaaacggctgaag
atcatcagtgagcacactgaactgggaagcggtttcaaggtggcaatgaaggatatggaa
ctgagggggaccggcaacctgctcgggcgggaacagagcggccacttggccaccgtcgga
ctggatatgtacatccgtatcctggatgaggcgatcagggatttgcagaatgtgggggtc
aaggacgaggagcgggaagtcttcttggagctcgattataccggcttcattcctgatacc
tatatcaaggcaccttccgttaagtttgatatttatcgtaaaatatcctcaatcgtgaac
gatgagcaactgcaaggtcttgcaagtgaattatccgaccggttcggccctcctccggtg
gaagttgcaaacctgctcttcattgccgagatcaagattatctgccgcaagctttccatc
atccacctgaccgaccgcaagggtgtggtggccgttgaattcggcaaagttgcagacctg
aatgtaaacaaggtcatgaatctcatttcgctgagcaataaaactgtttggcttgatatg
agacgtatgaatgtcatgtatttgaaaactgatgcggtttctctcaaggataaagcgttg
ttcttgatggagaaattgcaacgtctggtatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (36)   

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