KEGG   Staphylococcus carnosus subsp. carnosus: SCA_1581
Entry
SCA_1581          CDS       T00863                                 
Name
(GenBank) putative helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
sca  Staphylococcus carnosus subsp. carnosus
Pathway
sca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCA_1581
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sca03019]
    SCA_1581
   03009 Ribosome biogenesis [BR:sca03009]
    SCA_1581
Messenger RNA biogenesis [BR:sca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SCA_1581
Ribosome biogenesis [BR:sca03009]
 Prokaryotic type
  rRNA helicases
   SCA_1581
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_30 Flavi_DEAD AAA_22
Other DBs
NCBI-ProteinID: CAL28486
UniProt: B9DMG9
Position
complement(1601592..1603115)
AA seq 507 aa
MQKFKDLGVSDKTAETLGNMGFEEPTPIQTDSIPYALHGLDILGQAQTGTGKTGAFGIPL
IEKVVDKEGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTDDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEDRQTML
FSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQIEQTND
RRMRALRPPHRKEVLRARENDIKEKVEKWMSQEHSERLQDISSQLLNEYNDVELVSALLQ
ELVEANDEVEVQLTFEKPLARKGGRHNSKGPRRSGKPNKRSNNKFDNKNRRGKGNKGGKN
NGGKKFKNDKKDHKKPIKGRTFADMQK
NT seq 1524 nt   +upstreamnt  +downstreamnt
ttgcaaaaatttaaagatttaggtgtttcagataaaactgcagaaacacttggtaatatg
ggttttgaagaaccgactccaatccaaacagatagtatcccttacgctttacacggatta
gatatcttaggacaagcgcaaacaggtactggtaaaacaggggcattcggtatcccatta
atagaaaaagtagtagataaagaaggcgtacaagcgttaattttagctccgactcgtgaa
ttggcaatgcaagttgcagaacaattaagagcattcagtcgtggacaacgtgtccaagtt
gcgacagtattcggtggtatgccgattggacgtcaaattaaagcattgaaaaaaggtccg
caaattgttgtaggtacaccaggtcgtgtgattgaccatttaaatcgtcgtactttgaaa
actgacgatattaaaacattgatcattgatgaagcggatgaaatgatgaacatgggattc
attgatgatatgagatttattatggatcacttaccatctgaagacagacaaacaatgttg
ttctcggcaactatgccgaaagcaattcaaacacttgttcaacaatttatgaaatcacca
aaaattgttaaaacaatgaataacgaaatgtcagatcctcaaattgatgagtattataca
attgtaaaagaattagagaaatttgaaacatttactaatttcttagatgtacatcaacct
gaattggcgattgtattcggtcgtacaaaacgtcgtgtagatgagttgactagtgcgtta
atttctaaaggttataaagcagaaggcttgcatggtgatatcactcaagcaaaacgttta
gaagtattgaaaaaattcaaaaatgatcaaatcgacattttagttgcaacagatgttgct
gcacgtggattagacatttcaggtgtcagccatgtatacaatttcgatattcctcaagat
actgaaagttacacacaccgtattggtcgtacaggtcgtgctggtaaaaaaggtatcgct
gttacatttgtgaatccgattgaaatggattatatccgtcaaatcgaacaaacaaatgac
cgtcgcatgagagctttacgtccgccgcatcgtaaagaagttttacgtgcacgtgaaaat
gacattaaagaaaaagttgaaaaatggatgtctcaagaacattcagaacgtttacaagat
atttcttctcaattgttaaatgaatataatgatgtagaacttgtatcagctttattacaa
gaattagttgaagctaatgatgaagtagaagtacaattaacatttgaaaaaccgcttgcg
cgtaaaggtggccgtcataactcaaaaggaccacgtagaagcggcaaacctaataaacgt
tcaaataataaatttgataataaaaaccgtcgcggtaaaggtaataaaggcggtaaaaac
aacggtggcaagaaatttaaaaacgataaaaaagatcataaaaaaccaattaaaggacgt
acatttgcagacatgcaaaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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