KEGG   Streptomyces scabiei: SCAB_11651
Entry
SCAB_11651        CDS       T01187                                 
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
scb  Streptomyces scabiei
Pathway
scb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:scb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SCAB_11651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scb03400]
    SCAB_11651
Enzymes [BR:scb01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SCAB_11651
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SCAB_11651
DNA repair and recombination proteins [BR:scb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SCAB_11651
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS zf-TFIIB Ribosomal_S13 NFACT_N Zn-ribbon_8 zf-RRN7
Other DBs
NCBI-ProteinID: CBG68333
UniProt: C9Z529
Position
complement(1308762..1309631)
AA seq 289 aa
MPELPEVEALRDFLVGSLVGHEAVRVLPVAISVLKTYDPPVSAFEGREITDVRRHGKFLD
IEADGGELHLVTHLARAGWLQWKDRLPDGPPRPGGRNPLALRVALETGEGFDLTEAGTQK
RLAVYVVRDPAQVPGIARLGPDPLADEFDVTRFAGLLAGERRQIKGALRDQSLIAGIGNA
YSDEILHAARMSPFRLTSSLKPEEIRHLHEALRTTLTEAVERSRGLAAGRLKAEKKSGLR
VHGRAGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq 870 nt   +upstreamnt  +downstreamnt
atgcctgaattgcccgaagtcgaagcgctccgggacttcctggtggggagcctcgtcggg
cacgaggccgtgcgcgtcctgcccgtggcgatcagcgtgctcaagacgtacgacccaccc
gtgagcgcgttcgaggggcgggagatcacggacgtacggcgccacggcaagttcctcgac
atcgaggcggacgggggagagctgcacctcgtcacccatctggcgcgcgccgggtggctg
cagtggaaggaccggctgccggacggcccgccgcggccgggcggcaggaaccccctggcc
ctgcgtgtcgccctggagaccggcgagggcttcgacctcaccgaggccggcacgcagaag
cggctggcggtgtacgtcgtacgggacccggcgcaggtccccggcatcgcgaggctcggt
ccggaccccctcgccgacgagttcgacgtgacccggttcgccgggctgctggcgggggag
cggcggcagatcaagggcgcgttgcgcgaccagagcctgatcgccgggatcgggaacgcg
tacagcgacgagatcctgcacgccgcgcggatgtcgcccttccggctgacctcgtccctg
aagccggaggagatccggcatctccacgaggcgctgcgcaccacgctgaccgaggccgtg
gagcgctcccgggggcttgcggcgggaaggctgaaggcggagaagaagagcgggctgcgc
gtgcacggccgggccggggagccctgcccggtgtgcggtgacaccgtccgggaggtctcc
ttcagcgattcgtcgctccagtactgcccgacgtgtcagacgggcggcaagccgctcgcc
gaccgacggctgtcacggttgctcaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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