KEGG   Streptomyces scabiei: SCAB_40781
Entry
SCAB_40781        CDS       T01187                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
scb  Streptomyces scabiei
Brite
KEGG Orthology (KO) [BR:scb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scb03032]
    SCAB_40781 (topA)
   03400 DNA repair and recombination proteins [BR:scb03400]
    SCAB_40781 (topA)
Enzymes [BR:scb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SCAB_40781 (topA)
DNA replication proteins [BR:scb03032]
 Prokaryotic type
  DNA Topoisomerases
   SCAB_40781 (topA)
DNA repair and recombination proteins [BR:scb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SCAB_40781 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim HC2 Toprim_4 Toprim_2
Other DBs
NCBI-ProteinID: CBG71152
UniProt: C9Z2D8
Position
complement(4598089..4600935)
AA seq 948 aa
MSPTSETAKGGRRLVIVESPAKAKTIKGYLGPGYIVEASVGHIRDLPNGAAEVPEQYTGE
VRRLGVDVEHDFAPVYVVNADKKAQVRKLKDLLKESDELFLATDEDREGEAIAWHLQEVL
KPKVPVKRMVFHEITKAAIQAAVANPRELNQRLVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFATGRAGDASDPASLVARLQSVD
GRRVAQGRDFDSVGQLKGANVLHLDEANARALAAALENTRFSVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSETAVAAARAQVTQLYGA
DYLPAQPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMK
DATGNSVTVKIGGTASDGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
GEGDALSAEQITVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQAVPWLKRFYFGEGT
GSGGTAAEAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGDGIVLRVGRYGPYIERGEK
DAEGHQRADVPEDMAPDELSVELAEELLAKPSGDFELGADPATGHQIIARDGRYGPYVTE
VLPEGTPKTGKNAVKPRTASLFKSMSLDTVTLADALKLMSLPRVVGADAEGQEITAQNGR
YGPYLKKGTDSRSLQTEDQLFTITLEEALAIYAQPKQRGRAAAKPPLKELGEDPVSAKPV
VVKDGRFGPYVTDGETNATLRSGDSVEEITPERGYELLAEKRAKGPAKKTAKKAPAKKTA
TKTAAKKAAPAKKTAAAKTAASKTAAAKKAAPAKKAAAKKATSAGESA
NT seq 2847 nt   +upstreamnt  +downstreamnt
ttgtccccgaccagcgagaccgcgaagggcggccgccgactcgtcattgtcgagtcgcct
gccaaggcgaagacgatcaagggctatctcggccccggctacatcgtcgaggcgagcgtg
gggcacatccgcgaccttcccaacggcgccgcggaggtgcccgagcagtacaccggcgag
gtgcgccgcctaggcgtggacgtcgagcacgacttcgcgcccgtctacgtggtcaacgcg
gacaagaaggcgcaggtcaggaagctcaaggatctcctgaaggaatccgacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaggccatcgcctggcacctccaggaggtgctc
aagcccaaggtcccggtcaagcggatggtcttccacgagatcaccaaggccgcgatccag
gccgccgtcgccaacccgcgcgagctgaaccagcgcctcgtcgacgcccaggagacccga
cgcatcctcgaccgtctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccgcggctgtcggcgggccgcgtccagtccgtcgcgacccggctcgtcgtggagcgggag
cgggagcgcatcgcgttccgctcggccgagtactgggacctgaccggcaccttcgccacc
ggccgcgccggtgacgcctccgacccggcgtccctggtcgcccgtctgcagtccgtggac
ggccgccgggtcgcgcagggccgcgacttcgactcggtcgggcagctcaagggcgcgaac
gtcctgcacctggacgaggcgaacgcgcgtgcgctggccgccgccctggagaacacccgc
ttctcggtccggtccgtcgagtccaagccgtaccgccgctcgccgtacgcccccttccgc
acgacgacgctccagcaggaggcctcgcgcaagctgggcttcggtgcgaaggcgacgatg
caggtggcgcagaagctgtacgagaacggcttcatcacctatatgcgtacggactccacg
acgctcagcgagaccgccgtggccgccgcccgtgcccaggtcacccagctgtacggcgcc
gactacctgccggcgcagccgcggacgtacgccgggaaggtcaagaacgcgcaggaggcg
cacgaggcgatccggccctcgggtgatcgtttccgtacgcccgccgagaccggtctgacc
ggcgaccagttcaagctctacgagctgatctggaagcggaccgtcgcctcccagatgaag
gacgcgaccggcaacagcgtcaccgtcaagatcggcggcaccgcctccgacggccgggac
gccgagttcagcgcctccggcaagacgatcacgttccacggcttcctcaaggcctacgtc
gagggcgccgacgacccgaacgccgagctggacgaccgcgagcgcaggctgccgcaggtc
ggcgagggcgacgcgctgtccgccgagcagatcacggtcgacgggcacgccaccaagccc
ccggcccgctacaccgaggcgtcgctggtcaaggagctcgaagagcgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcaccatcctcgaccggggctatgtcttcaagaag
ggcacggccctcgtgccgtccttcctgagcttcgccgtggtcaacctgctggagaagcac
ttcgggcggctcgtcgactacgacttcaccgccaagatggaggacgacctcgaccgcatc
gcgcgcggcgaggcccaggccgtgccgtggctgaagcggttctacttcggcgagggcacg
ggctccggcggcactgcggccgaggccggcaacggcgacggggaccacctcggcggcctg
aaggaactggtcaccgacctgggcgcgatcgacgcccgcgaggtgtcgtcgttccccgtc
ggcgacggcatcgtgctgcgcgtcgggcgctacggcccgtacatcgagcgcggtgagaag
gacgcggaagggcatcagcgggccgacgtgcccgaggacatggcccccgacgagctgagc
gtcgaactcgccgaggaactgctcgccaagcccagcggcgacttcgagctgggcgccgac
ccggcgacgggccatcagatcatcgcccgcgacgggcgctacggcccgtacgtcaccgag
gtgctccccgagggcaccccgaagaccggcaagaacgcggtcaagccgcgcacggcctcg
ctgttcaagtcgatgtcgctggacacggtgaccctcgccgacgcgctgaagctgatgtcg
ctgccgcgcgtggtcggcgccgacgccgagggccaggagatcaccgcgcagaacggccgg
tacgggccctatctgaagaagggcacggactcgcgctcgctgcagaccgaggaccagctc
ttcacgatcaccctcgaagaggcgctggcgatctacgcccagcccaagcagcgcgggcgg
gccgccgccaagccgccgctgaaggaactgggcgaggacccggtcagcgcgaagccggtc
gtggtgaaggacggccgcttcgggccgtacgtcaccgacggcgagaccaacgcgacgctg
cggtccggggacagcgtggaggagatcactcccgagcgcgggtacgaactgctcgcggag
aagcgggcgaagggccccgccaagaagacggccaagaaggcgccggcgaagaagacggcg
accaagaccgcggcgaagaaggccgcgccggcgaagaagaccgctgccgcgaagacggct
gcttcgaagacggccgcggcgaagaaggcggctcccgcgaagaaggcggctgcgaagaag
gcgacgtcggccggggagagcgcctag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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