KEGG   Saccharomyces cerevisiae (budding yeast): YDL084W
Entry
YDL084W           CDS       T00005                                 
Symbol
SUB2
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03013  Nucleocytoplasmic transport
sce03015  mRNA surveillance pathway
sce03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    YDL084W (SUB2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    YDL084W (SUB2)
   03015 mRNA surveillance pathway
    YDL084W (SUB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YDL084W (SUB2)
   03041 Spliceosome [BR:sce03041]
    YDL084W (SUB2)
Enzymes [BR:sce01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     YDL084W (SUB2)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     YDL084W (SUB2)
Spliceosome [BR:sce03041]
 Complex C
  Other components
   EJC/TREX
    YDL084W (SUB2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    YDL084W (SUB2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 851475
NCBI-ProteinID: NP_010199
SGD: S000002242
UniProt: Q07478
Structure
Position
IV:305237..306577
AA seq 446 aa
MSHEGEEDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH
STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST
LQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKN
KDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRD
KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL
LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRIC
VSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLA
KIQERFDVKIAEFPEEGIDPSTYLNN
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgtcacacgaaggtgaagaagatttattggagtactccgataacgaacaagaaattcaa
attgatgcctctaaggccgctgaagctggagaaactggcgccgccacttctgcaactgaa
ggtgataataataacaacactgcagctggcgacaagaaaggttcctatgttggtatccat
tccaccggtttcaaagatttcttgctaaagccagaactatcaagagccatcattgactgt
ggttttgaacatccttctgaggtccagcaacataccattcctcagtcaattcatggtacc
gatgtcttgtgtcaagcaaagtctggtttaggtaagacagctgtctttgtcttatccact
ctgcaacaattggaccctgttccaggtgaagttgccgttgttgtcatttgtaatgctaga
gaactggcctatcaaattcgtaacgagtatttgagattttccaaatatatgccagacgtt
aagacagcagtcttttacggtggtactccaatttctaaggatgctgaacttttaaagaat
aaagatactgctcctcacattgttgttgcaactccaggtcgtttaaaagcgttagtgaga
gaaaaatacattgatttgtcacacgtcaagaactttgtcatagatgaatgtgataaggtt
ttagaagaattagacatgagaagagatgtgcaagaaattttcagagctactccaagagac
aaacaagtcatgatgttttcagccacactttctcaagaaattagaccaatttgtagacgc
ttcttacagaatccattggaaattttcgtcgatgatgaagctaagctaaccttgcacggg
ttgcaacaatattatatcaaattagaagaacgtgaaaagaaccgtaaattggctcaatta
ttagatgatttggagttcaatcaagtcattattttcgttaaatctaccacaagagctaat
gagttgaccaaactattaaacgcctctaactttccggctatcaccgttcatggtcatatg
aaacaagaagaacgtattgctcgttacaaggctttcaaagattttgaaaaacgtatttgc
gtgtccacagatgtttttggtagaggtatcgatattgaacgtattaatttagccatcaat
tacgatttgactaatgaagctgaccaatatttacatcgtgtcggtagagctggtagattt
ggtactaagggtttggctatttcattcgtttcttcaaaggaagatgaggaagtcttggct
aagatccaagagcgtttcgatgtcaaaatcgctgaattcccagaagaaggcattgatccg
tccacttatttgaataattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (68)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (63)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (6)   
   PDB (6)   
Protein domain (3)   
   Pfam (3)   
All databases (89)   

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