KEGG T00005: YDL140C

Saccharomyces cerevisiae (budding yeast): YDL140C

Entry

YDL140C CDS T00005

Gene name

RPO21, RPB1, RPB220, SUA8

Definition

Rpo21p (EC:2.7.7.6)

Orthology

K03006

DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]

Organism

sce Saccharomyces cerevisiae (budding yeast)

Pathway

sce00230	Purine metabolism
sce00240	Pyrimidine metabolism
sce01100	Metabolic pathways
sce03020	RNA polymerase

Module

sce_M00180

RNA polymerase II, eukaryotes

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:sce00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:sce00240]
Genetic Information Processing; Transcription; RNA polymerase [PATH:sce03020]

SSDB

Motif

Pfam:

RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R

Other DBs

NCBI-GI:

NCBI-GeneID:

SGD:

MIPS:

UniProt:

Structure

PDB:

1TWF 3CQZ 1K83 1I50 3S14 2NVQ 3RZO 1TWC 3S1N 1I3Q 3S1M 3M3Y 3S1R 3S2D 3S17 3HOU 1TWA 3S16 3S1Q 3S2H 3S15 3RZD 3PO2 3PO3 1TWG 1I6H 2NVT 3GTL 4BBR 4A93 4A3D 4A3E 3HOY 2VUM 2YU9 2NVY 1TWH 2E2I 3GTJ 4A3B 4A3C 4A3F 4A3G 4A3K 3HOV 2E2J 1R9T 3M4O 4BBS 4A3L 3HOW 2NVX 1SFO 3HOX 3HOZ 4A3J 3I4M 3GTG 4A3I 3K7A 3GTK 3GTM 3GTQ 2R92 2R7Z 2B63 1Y1V 1WCM 1PQV 3FKI 4A3M 3I4N 3GTP 2E2H 3H3V 3GTO 2R93 1Y1W 1Y1Y 1NIK 2B8K 1NT9 1R9S 3QT1 3K1F 2NVZ 4GWQ 1Y77 1R5U 3J1N 2JA5 2JA6 2JA7 2JA8

Position

IV:complement(205360..210561)

AA seq 1733 aa
MVGQQYSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGS
IDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNE
LMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLK
LVGSWKKDRATGDADEPELRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLP
VPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHV
ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLE
LDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKR
AGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNA
DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTF
IELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSP
KDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHN
GFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVR
FLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFV
DRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR
LVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVD
LLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNI
RRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCC
LLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMT
LNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEH
TTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRA
AMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHML
KKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVP
GIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGG
LTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGA
FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS
NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR

NT seq 5202 nt +upstreamnt +downstreamnt
atggtaggacaacagtattctagtgctccactccgtacagtaaaagaggtccaattcggt
cttttctcacctgaagaagttagagcaatcagtgtggccaaaattagatttccagagaca
atggatgaaacccagacgagagcgaaaattggtggtctaaacgaccctaggttaggctct
attgatcgtaatctgaagtgtcaaacttgtcaagagggtatgaacgaatgtcctggtcat
tttggtcacatagatttagcaaaacctgtatttcatgttggttttattgccaaaattaag
aaagtatgtgagtgtgtctgtatgcactgtggtaagctattactggatgaacataatgaa
ttaatgagacaagctctagcaatcaaagacagtaaaaaaaggtttgctgcaatttggact
ttatgtaaaacaaaaatggtctgcgaaacagatgtcccttctgaagatgatcctactcag
ctcgtatcaaggggaggttgtggtaatacacagcctacaattcgtaaggatgggttgaaa
ttagttggtagttggaaaaaagatagagccacgggggatgcggatgaaccagaactaaga
gttttaagtacggaggaaatcttgaatatttttaagcatatctcagtaaaagacttcact
agtttgggtttcaacgaagttttttctcgtccagaatggatgattttaacatgccttcct
gtcccaccaccaccggtgcgtccatccatttccttcaatgaatctcaaagaggtgaggat
gatttaacctttaaacttgctgatattttaaaagctaatattagtttggaaacactagag
cataacggtgctccacatcatgctattgaagaagcagagagtttattacaatttcatgtt
gccacttatatggataatgatattgctggtcaaccacaagctcttcaaaagtccggccgt
cccgttaaatctattcgtgctcgtttgaagggtaaagagggtcgtatcagaggtaattta
atgggtaagcgtgtggatttttcggcaagaactgttatttctggtgatcctaatttggaa
ttagaccaagtcggtgttccaaaatctattgccaagactttaacatacccagaagtggtc
acaccatataacatagatcgtctgacgcaacttgttaggaatggaccaaatgagcacccc
ggtgccaaatacgtcattcgtgatagcggagaccgtatagatttaagatacagtaaaagg
gcaggtgatattcaattacagtatgggtggaaagttgaacgtcatattatggacaatgat
ccagttttattcaaccgtcaaccttcgttgcacaaaatgtccatgatggcccacagagta
aaagttattccatattctacatttagattgaatttgtccgttacatctccatacaatgcc
gatttcgacggtgacgaaatgaatcttcacgttcctcagtctgaggaaacaagggcggaa
ctttctcaattatgtgctgttcctctgcaaattgtttcaccacaatctaacaaaccttgt
atgggtattgttcaagatactttgtgtggtattcgtaaactgacattaagagatacattt
atagaacttgatcaagttttgaatatgctttattgggttccagattgggatggtgttatt
ccgacacctgcaattatcaagcccaaacctttgtggtccggtaaacaaatcttgtctgtg
gctatcccaaacggtattcatttacaacgttttgatgagggcactactctgctttctcca
aaggataatggtatgcttattattgacggtcaaatcatttttggtgtagtagagaaaaaa
accgttggttcctccaatggtggtttaattcatgttgttacgagagaaaagggacctcaa
gtttgtgctaagttgtttggtaacatacagaaagttgttaacttttggttactacataat
gggttttcaacaggtattggtgataccattgcggacggcccaacaatgagggaaattaca
gagacaattgcagaggctaaaaagaaagttttggatgttacgaaagaagcccaggcaaac
ttattgactgctaaacatggtatgactctccgtgagtcttttgaggataacgttgttcgg
ttcctaaatgaagcaagagataaggcaggtcgtttagctgaagtcaatttgaaagatttg
aacaatgtgaaacaaatggttatggcaggttccaagggttcatttattaatatcgcgcaa
atgtcagcttgtgtaggacagcaatctgttgaaggtaaacgtattgcttttgggttcgtt
gatcgtaccttacctcatttctctaaagatgattactccccagagtctaaaggttttgtt
gagaactcatatttgagaggtttgaccccacaagaattttttttccatgcaatgggtggt
cgtgaaggtcttatcgataccgccgtcaaaacagccgaaacaggttatattcaacgtcgt
ttagtgaaagctctagaagatatcatggttcattacgataacaccacaagaaactcattg
ggtaacgttattcagtttatttatggtgaagatggtatggatgctgcgcatattgaaaag
caatcgctagatactattggtggctccgatgcagcttttgaaaagagatacagagttgat
ttattgaatacagaccatacccttgatccctcactattggaatccggatctgagatactt
ggcgatttgaaacttcaagttctcctggatgaagaatacaaacaattagtgaaagatcgt
aaatttttgagggaagtttttgttgatggtgaagcaaactggccattaccagtcaacata
agacgtattattcaaaatgctcaacaaactttccacatagatcatacgaaaccatctgat
ttaacaatcaaagacatcgttcttggtgtaaaggatttgcaagaaaacttattagtgttg
cgtggtaagaatgaaattatacaaaatgcccagcgagatgcagttacattgttctgctgt
ttattacgttcccgtttggccacacgtagagttctacaagagtacagactaacaaaacag
gcattcgattgggtattaagtaatatcgaggcacaattcctccgttctgttgttcaccct
ggtgaaatggttggtgttctagcagcccaatccattggtgaaccagccacacaaatgacc
cttaacaccttccattttgctggtgttgcttccaaaaaagttacttctggtgtcccccgt
ttaaaggaaattttgaatgtggccaaaaacatgaaaaccccttccttgactgtatactta
gagcctggtcatgctgccgatcaagaacaagcgaagttgatcagatctgctatcgagcat
accactttaaagagtgtcactattgcttcagaaatttactatgatcctgatccacgttcc
acagttattccagaagatgaagaaattatccaacttcatttctcattattggatgaagag
gctgaacaatcttttgaccaacaatcaccttggttattacgtctggaactggatcgtgca
gcaatgaatgataaagacttaacaatgggtcaggttggtgaaagaatcaagcaaacattc
aaaaatgatttgtttgttatctggtctgaagacaacgatgagaagttgatcatccgttgt
cgtgttgttcgtccaaagtcactagatgctgagactgaagcagaagaagatcatatgttg
aagaaaattgagaacacaatgttagagaatattacattacgtggtgtagagaacatcgag
cgtgttgtcatgatgaaatatgaccgtaaagtaccaagtccaactggtgaatacgttaag
gaacctgaatgggtgttggaaacagatggtgttaacttatctgaagttatgactgttcct
ggtatcgacccaaccagaatctataccaactccttcattgatataatggaagttctaggt
attgaagctggtcgtgcagccttgtataaagaagtttacaatgttattgcttctgatggt
tcgtatgttaactaccgtcatatggctttgttagtcgatgttatgacaacccaaggtggc
ttaacttctgttactcgtcatggtttcaacagatcaaatacaggtgccttaatgagatgt
tcatttgaagaaactgtcgaaattttgtttgaagctggtgcttcagccgaattagatgat
tgtcgtggtgtttcggaaaatgtcattcttggtcaaatggctccaatcggtaccggtgca
tttgatgtgatgatcgatgaggagtcactggtaaaatacatgccagaacaaaaaataact
gagattgaagacggacaagatggtggcgtcacaccatacagtaacgaaagtggtttggtc
aatgcagatcttgacgttaaagatgagctaatgttttcacctctggttgattcgggttca
aatgacgctatggctggaggatttacagcgtacggtggtgctgattatggtgaagccacg
tctccatttggtgcttatggtgaagcacctacatctcccggatttggagtctcctcacca
ggcttttctccaacttccccaacatactctcctacctctccagcgtactcaccaacatca
ccatcgtactcaccaacatcaccatcgtactcgccaacatcaccatcgtactcacctaca
tcaccatcgtattcaccaacgtcaccatcatattcgccaacgtcaccatcatattcgcca
acgtcgccatcgtattctccaacgtcaccatcgtattcgccaacgtcgccttcctactct
cccacgtcgccaagctacagccctacgtctccttcttattctcctacatctccatcatac
tctcctacgtcaccaagttacagcccaacgtcaccaagttacagcccaacgtctccagcc
tattccccaacatcaccaagttatagtcctacatcgccttcatactctccaacatcacca
tcctattccccaacatcaccttcttactctcccacctctccaaactatagccctacttca
ccttcttactccccaacatctccaggctacagcccaggatctcctgcatattctccaaag
caagacgaacaaaagcataatgaaaatgaaaattccagatga

All links

Pathway (5)   
   KEGG PATHWAY (4)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   MIPS-SCE (1)   
   OC (1)   
   SGD-SCE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (94)   
   PDB (94)   
Protein domain (8)   
   Pfam (8)   
All databases (128)   

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