KEGG   Saccharomyces cerevisiae (budding yeast): YER171W
Entry
YER171W           CDS       T00005                                 
Symbol
RAD3, REM1
Name
(RefSeq) TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03022  Basal transcription factors
sce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    YER171W (RAD3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    YER171W (RAD3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YER171W (RAD3)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YER171W (RAD3)
Enzymes [BR:sce01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     YER171W (RAD3)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     YER171W (RAD3)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     YER171W (RAD3)
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 ResIII DUF5667
Other DBs
NCBI-GeneID: 856918
NCBI-ProteinID: NP_011098
SGD: S000000973
UniProt: P06839
Structure
Position
V:527082..529418
AA seq 778 aa
MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ
MHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEV
SKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEK
LLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI
DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILT
DQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFL
QHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLII
EPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ
KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVF
FPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLS
VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRENDFLSFDAMR
HAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF
LRTMAQPTDPKDQEGVSVWSYEDLIKHQNSRKDQGGFIENENKEGEQDEDEDEDIEMQ
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgaagttttatatagatgatttaccagtgctttttccataccccaagatatatccagag
cagtataattatatgtgcgatattaaaaagactctggatgtaggtggaaatagtatcttg
gagatgccttcaggaacaggtaaaacggtctcattactatccctcacaattgcctaccag
atgcactacccagaacatagaaagatcatatattgttctcgtactatgtctgaaattgaa
aaagctttagtagagttagagaaccttatggattacagaactaaagaactaggctatcaa
gaggattttcgaggtcttggcttgacatcaagaaaaaatttgtgtttgcatcccgaagtg
agtaaggaacgaaaaggtacagtagtcgatgaaaagtgccgtagaatgacaaatgggcag
gcgaagagaaaattagaagaggatccagaggcaaatgtagaattgtgtgaataccatgag
aatttgtacaatattgaagtagaggattatcttccaaaaggcgtattttcttttgaaaaa
cttttgaaatactgcgaagaaaaaacactttgtccatattttattgttcgtcgtatgatt
tctctttgtaacattattatttattcttaccattatctattagatcctaaaattgctgaa
agagtttccaacgaggtttctaaagatagcattgtcatttttgatgaagcgcacaatatt
gataatgtgtgtatcgaatcgctgtcattagacttgacaacggatgcattgagaagagcc
acacgaggtgctaatgcgttagatgaacgtatttctgaggtcagaaaggttgactcacag
aaattacaggatgaatacgaaaaactagttcaaggtctccattctgcagatattcttacc
gaccaggaagagccatttgtggaaacacctgtattgccccaagatcttctaacagaagca
atcccgggaaatatacgaagagccgagcattttgtttcatttttgaaaagattgatagaa
tatctgaagaccagaatgaaagttcttcacgttatttcagaaacgccaaaatcatttcta
cagcatttaaaacagttaactttcatagaaaggaaacctcttcggttttgctcagaaagg
ctatcattacttgtaagaactttagaagttacagaggtagaagattttactgcattgaaa
gacatagcaacttttgctactcttatatcaacatatgaggaagggtttttactaattatt
gaaccgtatgaaatcgaaaatgctgcagttccgaatccgattatgagatttacttgctta
gatgcatcgattgccatcaaaccagtctttgagagattttcttccgttattatcacttca
gggaccatatcaccattagacatgtatccaagaatgttaaactttaaaactgttttacaa
aaatcatatgccatgaccttagccaaaaaatcatttctaccaatgattattaccaagggt
tctgatcaagttgcaatttcttcaagatttgaaatcagaaacgatcctagtattgttcgt
aattacggttctatgctagtagagtttgccaagatcacacctgatggaatggttgttttt
ttcccctcatatctatatatggaaagtattgtttcaatgtggcaaacaatgggtattctt
gacgaagtttggaaacataaattaattttagttgagactcctgatgctcaagaaacttct
ttagccttagaaacctatagaaaggcttgctcaaatgggcgtggggcaattttgctttct
gttgctagaggaaaggtatctgaaggtatcgattttgatcatcaatatggcagaactgtg
ctgatgataggtatcccgtttcaatacacagaatcgcgtattttgaaagctcgcctagaa
ttcatgagggagaactatcgcatcagagaaaacgacttcttatctttcgatgcgatgaga
catgcagctcaatgtctggggagagtactgagagggaaggacgactatggtgtaatggta
ctagcagaccgtaggttttcaagaaaaagaagccagttaccaaaatggattgctcaaggt
ttgtctgacgccgatttgaacctttcgactgacatggccatatccaataccaaacaattc
ttgagaacaatggcacaacccacagaccctaaagaccaagagggtgtatctgtttggagt
tatgaagatttaataaagcaccagaatagcagaaaagatcaaggtggatttattgaaaac
gaaaacaaagaaggagaacaggatgaagatgaagatgaagatatagaaatgcagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (25)   
   PDB (25)   
Protein domain (5)   
   Pfam (5)   
All databases (59)   

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