KEGG   Streptomyces clavuligerus: BB341_06790
Entry
BB341_06790       CDS       T04717                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sclf  Streptomyces clavuligerus
Pathway
sclf03030  DNA replication
sclf03410  Base excision repair
sclf03420  Nucleotide excision repair
sclf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sclf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BB341_06790
   03410 Base excision repair
    BB341_06790
   03420 Nucleotide excision repair
    BB341_06790
   03430 Mismatch repair
    BB341_06790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sclf03032]
    BB341_06790
   03400 DNA repair and recombination proteins [BR:sclf03400]
    BB341_06790
Enzymes [BR:sclf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     BB341_06790
DNA replication proteins [BR:sclf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BB341_06790
DNA repair and recombination proteins [BR:sclf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     BB341_06790
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BB341_06790
   MMR (mismatch excision repair)
    DNA ligase
     BB341_06790
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BB341_06790
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 HHH zf-TFIIB ILEI
Other DBs
NCBI-ProteinID: ANW21836
Position
complement(1765515..1767707)
AA seq 730 aa
MPAQDTPGLPARARERHAELAEQIEEHRFRYYVKDQPVISDSEFDRLLRSLEELEERHPA
LCTPDSPTQKVAGQYETDLAKVEHRERMLSLDNAFDEEELTAWAERVEREVGSPDFHFLC
ELKVDGLAVNLTYEKGRLTRAATRGDGRIGEDITPNIRTIADVPDRLRGDRIPELVEIRG
EVYFPMDQFQQLNERRIAAGEQPYANPRNSASGSLRQKDPKVTATLPLHMVVHGIGAREG
FDIDCLSHAYDLLREWGLPTARHNRVVDSLEGVREFIAHYGENRHSMEHEIDGVVVKLDE
IPLQGRLGSTARAPRWAIAWKYPPEEVNTRLVDILVGVGRTGRVTPYAQVEPVQVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFVMPAECPECGT
ELRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRRSLDIEHFGYVAAAALTRPLEPAEPP
LKDEGDLFSLTVEQLLPIRAYVLDPDSKLPKRDPKTGEEKIATVFANQEGEPRKNALAML
RNIEAAKTRPLARVLTGLSIRHVGPVAAEALAREFRSVQRIQEATEEELAATEGVGAIIA
ASLKQWFAEEWHQEILRKWEAAGVRMAEEGADEEQGPRPLEGVTVVVTGTLQDYTRDGAK
EALQSLGAKVTGSVSKKTAFVVVGDNPGSKFDKAMQLKVPVLREDGFTLLLEQGPDAARE
AAVKEEPEEE
NT seq 2193 nt   +upstreamnt  +downstreamnt
ctgcccgcgcaggacacccccgggctgcccgcgcgggcacgggagcgccacgcggagctg
gccgagcagatcgaggagcaccgcttccgctactacgtcaaggaccagccggtcatcagc
gacagcgagttcgaccggctgctgcgctcgctggaggagctggaggagcgccaccccgcg
ctgtgcacgcccgactcgccgacccagaaggtcgccgggcagtacgagacggacctggcg
aaggtcgagcaccgcgagcggatgctctcgctggacaacgccttcgacgaggaggagctg
accgcctgggccgagcgggtcgagcgcgaggtcggcagcccggacttccacttcctgtgc
gagctgaaggtcgacggcctcgccgtcaacctgacctatgagaaggggcggctcacccgc
gcggcgacccggggcgacggccggatcggcgaggacatcacaccgaacatccgcaccatc
gccgatgtgcccgaccggctgcgcggggaccggattccggagctggtggagatccggggc
gaggtctacttcccgatggaccagttccagcagttgaacgagagacggatcgcggccggg
gagcagccctacgccaatccgcgcaactccgcctcgggctcgctgcggcagaaggacccc
aaggtcaccgcgacgctcccgctgcacatggtggtccacggcatcggcgcccgggagggc
ttcgacatcgactgtctctcccacgcctacgacctgctgcgcgagtgggggctgcccacc
gcccggcacaacagggtcgtggactccctggagggtgtgcgggagttcatcgcccactac
ggcgagaaccgtcactcgatggagcacgagatcgacggcgtggtcgtcaagctggacgag
atcccgctccaggggcggctcggctccaccgcgcgggccccgcgctgggccatcgcctgg
aagtacccgcccgaggaggtcaacacccggctggtggacatcctggtcggcgtcggccgc
accggccgggtcacgccgtacgcccaggtggagccggtgcaggtggcggggtccgaggtc
gagttcgccaccctgcacaaccaggacgtggtgaaggcgaagggcgtcctcatcggggac
acggtggtgctgcgcaaggccggtgatgtcatccccgagatcctgggcccggtggtggag
ctgcgggacgggaccgagcgggagttcgtgatgcccgccgagtgccccgagtgcggcacg
gagctgcggccgatgaaggagggcgacgtcgatctgcgctgccccaacgcccggtcctgc
ccggcacagctgagggagcgcctgttctatctcgcgggccgcagatccctggacatcgag
cacttcggctatgtcgccgccgccgccctcacccggccgctggagcccgccgagccgccg
ctcaaggacgagggcgacctcttctccctcaccgtcgaacaactgctgcccatccgggcg
tatgtcctggacccggacagcaagctgcccaagcgggacccgaagaccggcgaggagaag
atcgccaccgtcttcgccaaccaggagggcgagccccgtaagaacgccctcgcgatgctg
cggaacatcgaggcggcgaagacccgtccgctggcccgtgtcctgacagggctgtccatc
cgccatgtgggcccggtggcggccgaggcgctggcccgggagttccgttcggtccagcgg
atccaggaggccacggaggaggagctggcggcgacggagggcgtcggcgccatcatcgcg
gcctcgctcaagcagtggttcgcggaggagtggcaccaggagatcctgcgcaagtgggag
gccgccggggtgcggatggcggaggagggggccgacgaggagcagggcccccggccgctg
gaaggagtcaccgtcgtggtgacgggaacgctccaggactacacaagggatggcgcaaaa
gaggcccttcagagccttggcgcgaaagtgaccggttctgtttccaagaaaaccgctttt
gtggttgtcggtgacaaccctggttccaagttcgacaaagccatgcagttgaaggtgccg
gttctccgtgaggacggctttacccttctgctggaacaagggcctgatgcggcacgtgag
gctgctgtgaaggaagagccggaagaggaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

Download RDF
DBGET integrated database retrieval system