KEGG T01331: SCHCODRAFT

Schizophyllum commune: SCHCODRAFT_46359

Entry

SCHCODRAFT_46359 CDS T01331

Definition

hypothetical protein

Orthology

K10747

DNA ligase 1 [EC:6.5.1.1]

Organism

scm Schizophyllum commune

Pathway

scm03030	DNA replication
scm03410	Base excision repair
scm03420	Nucleotide excision repair
scm03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:scm03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:scm03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:scm03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:scm03430]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 833 aa
QGSGTFFAMPKSAKATPPQQASLKEMWGKKKASTSAKSAKDASDSANSEVKPSKPASGAC
AYTEDELRPETSTGEKTAKAIESDDEEAPTSSQKATSKKTSLKQTKTKKDKATAADSKSE
GRRRPKKASEKAAPATSDAEPDAEASVPPSSDVEAAEEEEDEDDEALLEDEEGEGAATRA
VAAKAAEAALARTSDVDIKGGWKVGDPVPYAALTKTFSHIESTTKRLEKNAFLTAFLTLV
IQRSAPNDHNSLLQAVYLCINRLSPDYIGIELGIGESLLIKAISESTGRNAGLIKADLKK
EGDLGLVAMNSKNSQRTLFKPKPLTLPFVFSNLKEIALSSGHSSQTKKVSIITKLLAACQ
DFEAKYIVRSLEGKLRIGNAERSVLVALAHAAVLAENAKRDRKLHGEKLAARLEESTNIV
KAVYSELPSYDKVIPALLDHGIDGLREHCKLSPGVPLKPMLAKPTKAIGEVLDRFENKRF
TCEYKYDGERAQVHLMEDGKIAVFSRNSEDMSKKYPDLMEQIPRCIKDSTKSFVLDAEAV
AIDRTTGKLMPFQELSKRKRKDVKVEDIQVKVCLFAFDLLYLNGEPLLQKSLAERRVLLR
ESFQIVESEFQFAKSTDSETVEEIQTFLEESVKDGCEGLMVKMLESDASYYEPSRRSINW
LKLKKDYLAGVGDSLDLVVVGGYYGKGKRTNVYGAFLLACYDADSEEYQTICKIGTGFSE
EALQSHYNVLKPLEMEKPRGDIKVGGAKPDIWFEPKVVWEVLTADLSLSPVYTAAMGLVD
ERGISLRFPRFIRIRDDKNADNATGCEQVAEMYERQALAQGGGKKGKVVDDFW

NT seq 2502 nt +upstreamnt +downstreamnt
caaggctcaggaacattcttcgcgatgcctaaatctgccaaggcgactccccctcagcag
gccagcctcaaggaaatgtggggcaagaagaaggcatctacgagcgccaagtccgccaaa
gacgcgtcagattccgccaattccgaagtgaagccttccaagccagccagcggtgcgtgt
gcctatacagaagatgaacttcgccctgaaaccagcacaggcgagaagacggccaaagcg
atcgagtccgacgatgaagaagcgcccacttcctcgcagaaggcaacttcgaagaagacc
tctttaaagcagaccaagaccaagaaagataaggctactgcagcagactccaaatctgaa
ggtcgtcgccgacccaagaaagcgtcggagaaggctgcaccagcgacgtcggacgctgaa
ccagacgccgaagccagtgtacccccgagcagtgatgttgaagcggcagaggaagaggag
gatgaagacgatgaggctctgcttgaagatgaggaaggcgagggggctgctactcgcgcg
gttgcagcgaaagccgctgaagccgcattagcacgcacttcagatgttgacatcaaaggt
ggctggaaagtcggagacccagtaccgtatgccgcgctcacgaagactttctctcacatc
gagtccacaacgaagcgactggagaagaatgccttcctcacagcattcctgaccctcgtc
atacaacgcagcgcgccaaacgaccacaactcgttgcttcaagccgtctacttgtgcatc
aacaggctcagtccagattacatcggcatcgagctgggtatcggcgagagtctgctcatc
aaggcgatcagcgagtcgactggacgaaacgcgggcctcatcaaggctgacctaaagaag
gagggtgacctcgggctcgtcgccatgaactcgaagaacagtcagcggacgctgttcaag
ccgaagcctctgacgctacctttcgtcttctcgaacctcaaggagatcgcgctctcttct
ggtcattcctcgcaaaccaagaaagtatccatcattacgaagctgcttgctgcatgtcag
gactttgaggcaaagtacatcgtgcgtagtctagagggcaagctgcgcattgggaatgcg
gagagatctgtacttgtcgccctagcgcatgctgcagttttggccgagaatgcaaagcga
gatcgcaaactacatggcgaaaagctcgctgctcgcttggaagagagcacgaatatagtc
aaggctgtatacagtgagctgccctcatacgacaaggtcatacctgcactgctcgaccac
ggcatcgacggcttgcgagagcactgcaagctttccccgggcgtacccctcaagcctatg
ttggccaagccgacgaaggctataggcgaggtgctcgatcggttcgagaacaagcgcttc
acttgcgagtacaagtacgacggggagcgtgcgcaggtgcacctcatggaagacggtaag
atcgcggtgttcagtcgcaactcggaggacatgagcaagaagtatcctgatttaatggag
cagattccgcggtgtatcaaagacagcaccaagtccttcgtcttggatgccgaagctgtc
gccatcgaccgcacgactggcaagctcatgcccttccaagagctcagcaagcgcaagcgg
aaggatgtcaaggtcgaggacatccaggtcaaagtctgcttgttcgcgttcgacttgttg
tacctcaacggcgagcctttgctgcaaaaatcgttggcagagcgccgcgtgctcttgcgc
gagtccttccagattgtcgagagcgaatttcagttcgccaagtcgacggatagcgaaacg
gtcgaggagattcagacgttcctcgaagaaagtgtgaaggatggctgcgagggcttgatg
gtcaagatgcttgagtcagacgccagctactacgagccaagtcgacgcagtatcaactgg
ctgaagctcaagaaggactacctcgccggtgtcggcgattcactcgaccttgttgtcgtc
ggcggctactacggcaagggcaagcgcacgaatgtctatggcgccttcttgctcgcctgc
tacgacgccgactccgaggagtaccaaacgatatgcaaaatcggtaccggattcagcgaa
gaggcgctacaatcgcactacaatgtactgaagcccctcgagatggagaagccgcgcggg
gacatcaaggtcggaggcgcgaagccagatatctggttcgagcccaaggtcgtctgggag
gtcctgacggcggacttgagtctgagtccagtgtacacggcagcgatgggattggttgac
gagcgcggcatatcgttgcgctttccgcggttcattcggatacgcgatgacaagaacgcc
gacaatgcgacgggctgtgagcaggtcgcggagatgtacgagcgacaagcgcttgcgcaa
gggggtggcaagaagggcaaggtggttgatgacttctggtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SCM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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