KEGG T01331: SCHCODRAFT

Schizophyllum commune: SCHCODRAFT_53697

Entry

SCHCODRAFT_53697 CDS T01331

Definition

DNA ligase IV-like protein

Orthology

K10777

DNA ligase 4 [EC:6.5.1.1]

Organism

scm Schizophyllum commune

Pathway

scm03450

Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:scm03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

Unknown

AA seq 1065 aa
MQATPAPTEAPGSPQPSQTTASQQPFPEQPYNTDTLPFHILTAFFEKLQGERKQEKRRKL
LNHWFNKWREDNGPDLYPVLRLILPHRDRERNVYGLKEKALAKLYIKVIPLNKNDPDAMR
LLYWKKPTEKHASTCASSAASGDFPTVLYEVVSKRSSVTQSTLTIDDINDMLDQLADMSN
KSEKQSKIIQRLYNEATPEQQLWFARIILKDMNISVKETTVFAVFHPDAQALYNTCSDLK
KVAWQLADPSIRLHEDEKQVKLGQPFMPMLCKRPMKRIEDTAQEMDGSEFIIEEKLDGER
MQLHKMGNQYYYSSRKGKDYTYLYGSHVGAGSLTPYIAHRFHKQADSAILDGEMLVWDPI
SGRNLPFGTLKTAALDQSKKQAAPRPCLKVFDLLYLNGKSLIDKSTAFRKKNMRLVIEAL
PGRIEFVDEFKGRTAQDIREKMDEVMANRGEGLVIKHPKSQYVLNGRNNDWIKVKPEYMD
NMGETVDVLVVAGNYGSGRRSGGVSTLICAVFDDRNTGSFNENESKYATFVRVGSGLTYA
DYMWLRAKNWKTWDAKNSPTYLQTAKRSHEDKGDVYLEYEDTFILKVKAAEITPSDQYHV
RYTMRFPRALSIREEMAPGDCMTASAVVEQLKTAKKRKMETNKVSSTKKRKVVKKKVEML
PRFDGPDMKDVKEESDLFKGMKFVVISDPKARTGEEDRKKLMKLIRSHGGQCPQFAKDPA
AIVVYNGTSTPYDLQLIIRKDTNDVVRPQWVMDCIAKGELVPMEKKYFFFATTARKETAE
YGEDGGAESSGSVTQESSDDEAAAETSQSSKKRKRAGKSAEPETQDKTADEEKATPAPSK
PKVDLDPGLAAWLGYDEDDAAGVEDDAGEKDERGGRDDVESDNDSDNQDVKDEEEEDDMA
FWFNEDDGDDSATATLPTQKTTQSTADTQKGDDAPTTQPEVKMGDDNAMHYDEELIFKYL
CFYLDSPSNARASGMSVKSTAHEDEINESFEELRSKIESNGGRVVDLSEPKLTHVVLDKR
DLSRRIDLMRRTSKPKRRHLVLTAYIDACLEENTLLDEDGELGHA

NT seq 3198 nt +upstreamnt +downstreamnt
atgcaagcgacccctgcacccacagaagcccctggctctccgcagccttcgcaaacaaca
gcttcgcaacaaccatttcctgagcagccctataacaccgacaccctccccttccatatc
ctcaccgcattctttgagaagctacaaggagagcgtaagcaggagaagcgcaggaagcta
ctcaaccactggttcaacaaatggagagaagacaatggaccagacctgtatcctgtactg
agactgattcttccgcatcgcgaccgagaacgcaatgtgtatggcctgaaagagaaggca
ctcgccaagttatacatcaaggtgatacccttgaataagaacgacccagatgctatgcgg
ctgctgtactggaagaaaccgacagagaagcatgcaagtacttgcgcaagctctgctgca
tctggagactttccgaccgtgctttacgaggtcgtcagcaagcgttcctcggtcactcag
agcaccttgaccatcgacgacataaacgacatgctcgaccagcttgccgacatgtcgaac
aagtcagagaagcagtcgaagatcatccaaagactttacaatgaggcgacacccgagcag
cagctttggtttgcgcgcatcattctcaaggacatgaacatctccgtcaaggagaccacc
gtcttcgccgtcttccaccccgacgcgcaggcgctctacaacacttgctccgacctcaag
aaggtggcatggcagctcgcagatccgagcatccgactccatgaagatgagaagcaagta
aagctcggccagcctttcatgcccatgctctgcaagcggcccatgaagcggattgaggat
acggcgcaggagatggacggctctgagttcatcattgaggagaagctggacggcgagcga
atgcagttgcacaagatggggaaccagtactactactcttcgaggaaaggcaaggactac
acctacctctacggctcgcacgttggcgccggaagtctgaccccttacatcgcgcaccgc
ttccacaagcaggccgactccgccatcctcgacggcgaaatgctcgtctgggaccccatc
tccgggcgcaacctccccttcggcaccctcaaaaccgccgccctcgaccagtccaaaaag
caagccgcgccccgcccctgcctcaaagtcttcgacctcctgtacctcaacggaaagtcc
ctcatcgacaagtccaccgccttccgcaagaagaacatgcgcctggtcatcgaggcgctg
cccgggcggatcgagttcgtcgacgagttcaaggggcggacggcgcaggacatacgggag
aagatggacgaggtgatggcgaatcggggggaggggctggtgattaagcacccgaagtcg
cagtatgtgctgaatgggaggaataatgattggattaaggtgaagccggagtatatggac
aacatgggcgagaccgtggacgtgctcgtcgtcgccggcaactacgggtctggcagacgg
tccggcggcgtctcgaccctcatctgcgccgtcttcgacgaccggaatacaggcagcttc
aacgagaatgaatccaagtacgccacctttgtccgcgtcgggtctggcctaacgtacgcc
gactacatgtggctgcgcgcgaaaaactggaagacgtgggacgccaagaactcgccgacg
tacttgcagacagcgaagcggtcgcatgaagacaagggggatgtgtatttggagtacgag
gacacgttcatcctgaaggtcaaggcagcggaaatcacgccgtctgaccagtaccatgtc
cgctacacgatgcgctttcctcgcgcgctgtccatccgggaggagatggctccgggggac
tgcatgacggcgagtgccgtcgtcgagcagctgaagaccgcgaaaaagcgcaagatggag
acgaataaggtctcgtccacgaagaaacgcaaggtcgtgaagaagaaggtggagatgctc
ccgcgcttcgacggaccggatatgaaggacgtgaaggaggagagcgatttgttcaaggga
atgaagtttgtcgtcatctccgacccgaaggcaaggacgggcgaggaggacaggaagaag
ttgatgaagctcatccgctcgcatgggggacagtgcccgcagttcgcgaaggacccggct
gcaattgtggtgtacaatgggacgtcgacgccctacgacctccaactcatcatccggaag
gacacgaatgacgtggtgcgccctcagtgggtgatggactgtatcgcaaagggcgagttg
gtgccgatggagaagaaatatttcttcttcgccaccacagcgcgcaaagagaccgccgag
tacggcgaggatggcggtgctgaatcgagcggcagcgtgacgcaggagtcgtcggatgat
gaggccgccgcggagacgtcgcagagcagcaagaagcgcaagcgagctggcaagtcggcg
gaaccggaaacgcaggacaagaccgccgacgaggagaaggccacacctgcaccctcgaag
cccaaggtcgacctggacccggggcttgcggcgtggctgggctatgacgaggacgacgcg
gcgggagtggaggacgatgcaggggagaaagacgagcgcggtggccgagacgacgtcgag
tccgacaacgactcggacaatcaagatgtcaaggacgaagaggaagaggatgacatggcc
ttctggttcaacgaggacgacggagatgactctgccacggccacgcttcccacgcaaaag
accacacaatcgaccgccgacacgcagaagggggatgacgcccccacgacgcaaccggaa
gtgaagatgggcgacgacaacgcgatgcattacgacgaggagctcatattcaagtaccta
tgcttctacctcgactcgccctccaacgcacgcgcatccggcatgtccgttaaatcgacc
gcacatgaggatgagatcaacgagagctttgaagagctgagatcgaagatcgagagcaac
ggaggccgagtggtcgacctgagcgagccgaagttgacgcatgtcgtgctggataagcgg
gatttgagcaggaggatagatctcatgaggcgcacgtcgaagccgaaacgccggcatctc
gtgttaaccgcgtatatcgacgcgtgtctggaggagaacacgctactggacgaagatggt
gagctagggcacgcataa

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SCM (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

Download RDF

DBGET integrated database retrieval system