KEGG   Streptomyces coelicolor: SCO0945
Entry
SCO0945           CDS       T00085                                 
Symbol
SCM10.34c
Name
(RefSeq) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sco  Streptomyces coelicolor
Pathway
sco03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sco00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SCO0945 (SCM10.34c)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sco03400]
    SCO0945 (SCM10.34c)
Enzymes [BR:sco01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SCO0945 (SCM10.34c)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SCO0945 (SCM10.34c)
DNA repair and recombination proteins [BR:sco03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SCO0945 (SCM10.34c)
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS zf-TFIIB NFACT_N Ribosomal_S13 zf-RRN7 Zn-ribbon_8
Other DBs
NCBI-GeneID: 1096368
Kitasato: SCO0945
Position
complement(990249..991112)
AA seq 287 aa
MPELPEVEALRDFLTEHLTGREIVRVLPVAISVLKTYDPPLTALEGHRVAAVHRHGKFLD
VETAGGPHLVTHLARAGWLHWKDSLPSGLPKPGKGPLALRVALETGAGFDLTEAGTQKRL
AVYVVADPRQVPGVARLGPDPLAADFDEARFAALLDGERRQLKGALRDQSLIAGVGNAYS
DEVLHAAKMSPFKLAASLTDEETARLYAALRDTLTEAVERSRGIAAGRLKAEKKSGLRVH
GRTGEPCPVCGDTIREVSFSDSSLQYCPTCQTGGKPLADRRMSRLLK
NT seq 864 nt   +upstreamnt  +downstreamnt
atgccagaactgcccgaggtcgaggcgctccgcgacttcctgaccgaacacctcaccggc
cgcgagatcgtccgggtcctgcccgtggcgatcagcgtcctgaagacgtacgaccccccg
ctcacggcgctggaggggcaccgcgtggcggccgtgcaccgccacggcaagttcctcgac
gtggagaccgccggcggcccgcacctggtgacccacctggcccgggccggctggctgcac
tggaaggacagcctccccagcggcctgcccaagcccggaaagggcccgctcgcgctgcgg
gtcgccctggagaccggcgccggcttcgacctgacggaggcgggcacgcagaagcggctc
gcggtctacgtcgtggccgacccgcggcaggtgccgggcgtggcccggctcgggcccgac
ccgctcgccgccgacttcgacgaggcacgcttcgccgccctcctcgacggggagcggcgg
cagctcaagggcgccctgcgcgaccagagcctgatcgcgggcgtggggaacgcgtacagc
gacgaggtcctgcacgccgcgaagatgtcgccgttcaagctggccgcctccctcaccgac
gaggagaccgcccggctgtacgcggcgctgcgcgacacgctcaccgaggccgtggagcgc
tcccggggcatcgccgccggacgcctgaaggccgagaagaagagcggactgcgggtccac
ggccgcaccggagagccctgcccggtgtgcggggacaccatccgcgaggtctccttcagc
gactcctcgctccagtactgcccgacctgccagaccggcggcaaaccgctcgcggaccgc
aggatgtcccggctgctgaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-Gene (1)   
   KITASATO (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

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