KEGG T00085: SCO1202

Streptomyces coelicolor: SCO1202

Entry

SCO1202 CDS T00085

Gene name

ligB

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sco Streptomyces coelicolor

Pathway

sco03410	Base excision repair
sco03420	Nucleotide excision repair
sco03430	Mismatch repair
sco03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sco03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sco03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sco03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sco03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

Kitasato:

UniProt:

Position

1273700..1275238

AA seq 512 aa
MLLARLAQVSREVAATSARSRKTVLLAELFREAEAADVPVVIPYLAGRLPQGRIGVGWKV
LSRRVPPADAPTLTVRDVDARLTRLGAVSGAGSQAERTRLVGELMGAATEDEQRFLIGLL
TGEVRQGALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEALLADGPGALDRFRLTV
GQPVLPMLAHSASSVAEAVGKLGAAAVEEKLDGIRVQVHRDGGTVRIYTRTLDDITDRLP
EVTEAALALPGERFILDGEAISLDADGRPRSFQETAGRVGSRTDVATAARAVPVSAVFFD
VLSVDGRDLLDLPLTERHAELARLVPEPLRVRRTLVHGPEDTGAAEEFLARTLARGHEGV
VVKGLDAAYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARTADGSFA
MLGKTFKGMTDALLTWQTERLKELAVEEHGWGVTVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVVRYREDKRPEDADTVDTLLAAHPGVAP

NT seq 1539 nt +upstreamnt +downstreamnt
atgctgcttgcccggttggcccaggtgtcccgggaggtcgcggccacgtcggcgcggtcc
cggaagaccgtcctgctcgcggagctgttccgtgaggcggaggcggcggacgtgccggtc
gtcatcccgtacctggcgggacggctcccgcagggccggatcggcgtcggctggaaggtg
ctgagccgccgcgtgccgcccgcggacgcaccgaccctgaccgtacgtgacgtggacgcc
cgcctcacccggctcggcgcggtctccggcgccggttcgcaggccgagcggacccggctg
gtcggcgagctgatgggcgccgccacggaggacgagcagcgcttcctgatcgggctgctc
accggggaggtccgccagggcgccctggacgcggccgccgtcgagggcctggccgcggcg
acggacgctcccccggcggacgtgcggcgggcggtgatgctcgcggggtcgctccagacc
gtggccgaagccctgctggccgacggacccggcgccctcgaccggttccggctcaccgtg
gggcagccggtgctgccgatgctggcgcacagcgcgtcctcggtcgccgaggcggtcggc
aaactgggcgccgccgcggtggaggagaagctggacggcatccgcgtccaggtgcaccgg
gacggcggcaccgtgcggatctacacccgcacgctggacgacatcaccgaccggctcccc
gaggtcaccgaggcggccctggcactgcccggcgagcggttcatcctggacggcgaggcg
atctccctcgacgcggacgggcgcccccgctccttccaggagaccgccggccgggtcggc
tcccgcaccgacgtggccacggccgcgcgggcggtcccggtctccgcggtcttcttcgac
gtactctccgtcgacggccgcgacctgctcgacctgccgctgaccgaacggcacgcggag
ctggcgcggctggtccccgagcccctgcgggtacggcgcactctggtgcacggccccgag
gacaccggtgcggcggaggagttcctcgcccggacgctggcgcgcgggcacgagggcgtc
gtcgtcaaggggctcgacgccgcctacagcgcgggacggcgcggcgcgtcctggctgaag
gtcaagccggtccacacgctcgacctggtggtgctggccgccgagtggggccacggccgc
cgcaccggcaagctctccaacctccacctgggcgcccgcaccgccgacggctccttcgcg
atgctcggcaagaccttcaagggcatgaccgacgcgctgctgacctggcagaccgagcgc
ctgaaggagctggccgtggaggagcacggctggggcgtgaccgtacgccccgagctcgtc
gtcgagatcgcctacgacggcctccagcgctccacccgctacccggccggcgtcaccctc
cgcttcgcgcgcgtggtccgctaccgcgaggacaagcgccccgaggacgcggacaccgtg
gacaccctgctcgccgcccaccccggggtggccccgtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB (1)   
   KITASATO-SCO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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