KEGG T00085: SCO6707

Streptomyces coelicolor: SCO6707

Entry

SCO6707 CDS T00085

Gene name

ligC

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sco Streptomyces coelicolor

Pathway

sco03410	Base excision repair
sco03420	Nucleotide excision repair
sco03430	Mismatch repair
sco03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sco03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sco03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sco03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sco03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

GeneDB:

Kitasato:

UniProt:

Position

complement(7458874..7459941)

AA seq 355 aa
MDLPVMPPVKPMLAKSVAKIPPGMHYEAKWDGFRAIVYRDGDEVELGSRTGKPLTRYFPE
LVVAVRERLPERCVVDGEIVIARDGHLDFDALTERIHPADSRVRTLAERTPASLVAFDLL
ALDDASLLDVGLADRRALLVRALSGVTPPVHVAPATDDIEVARRWFEQYEGAGLDGVVAK
PLDLRYRQDERAMYKIKHERTADVVVAGYRFHKSGPVVGSLLLGLYDDRGLLQHVGVSAA
FTMKRRAELVAELEPLRMDDARGHPWAAWAEEAAHESARLPGAPSRWSGKKDLSWVPLRP
ERVVEVAYDHMENGARFRHTARFRRWRPDRTPESCTYAQLEEPVRYDLAEILGGP

NT seq 1068 nt +upstreamnt +downstreamnt
atggacctccccgtcatgccgcccgtgaagccgatgctcgccaagtccgtggcgaagatc
ccgccggggatgcactacgaggccaagtgggacggtttccgtgcgatcgtgtaccgcgac
ggggacgaggtggagctggggagccgtacgggcaagccgctgaccaggtatttcccggag
ctggtggtggcggtgcgggagcggctgcccgagcggtgcgtggtggacggggagatcgtc
atcgcgcgggacggtcacctggacttcgacgcgctcaccgagcggatccatccggccgac
tcccgggtgcggaccctcgcggagcgcacgccggcctcgctggtggccttcgacctgctg
gcgctggacgacgcgtccctgctcgacgtggggctggccgaccggcgggcgctgctggtg
cgggcgctgtcgggggtgacgccgccggtgcacgtggcgccggcgacggacgacatcgag
gtggcccggcggtggttcgagcagtacgagggggcggggctcgacggcgtcgtcgccaag
ccgctcgatctgcgctaccggcaggacgagcgggccatgtacaagatcaagcacgagcgg
acggcggacgtcgtcgtcgccgggtaccgcttccacaagagcgggcccgtggtcggctcg
ctgctgctcggtctgtacgacgaccgggggctgctccagcacgtgggggtgagtgccgcc
ttcacgatgaagcgccgggccgagctggtggcggagctggaaccgctgcgcatggacgac
gcccgggggcatccgtgggccgcctgggccgaggaggcggcgcacgagtcggcgcggctg
cccggcgcgccgagccgctggtcgggcaagaaggacctgtcctgggtgccgctgcgtccc
gagcgggtggtcgaggtggcgtacgaccacatggagaacggggcgcgcttcaggcacacg
gcccgcttccgccgctggcgcccggaccggacccccgagagctgcacctacgcgcagctg
gaggagccggtccgctacgacctggcggagatcctcggcgggccctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   GENEDB (1)   
   KITASATO-SCO (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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