KEGG   Spiroplasma culicicola: SCULI_v1c00860
Entry
SCULI_v1c00860    CDS       T03047                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
scq  Spiroplasma culicicola
Pathway
scq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCULI_v1c00860 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scq03019]
    SCULI_v1c00860 (rnr)
   03016 Transfer RNA biogenesis [BR:scq03016]
    SCULI_v1c00860 (rnr)
Enzymes [BR:scq01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SCULI_v1c00860 (rnr)
Messenger RNA biogenesis [BR:scq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SCULI_v1c00860 (rnr)
Transfer RNA biogenesis [BR:scq03016]
 Prokaryotic type
  tRNA degradation factors
   SCULI_v1c00860 (rnr)
SSDB
Motif
Pfam: RNB S1 OB_RNB CSD2 GP24_25
Other DBs
NCBI-ProteinID: AHI52427
UniProt: W6A607
Position
88838..90931
AA seq 697 aa
MREKILQKLEKDERVHLNDLLKLSNSDQELVTNALKELQAEYQIAWTKENVVYKIGDKYK
IGSIKINDKGFGFVKDLNDIENDYFVAPNAINGAISTDEVVFTLEKEADGRLKANVEEIA
LRTKTYLIGEIHESKDGRFLDFVANEPGFKNYRIVMVNSKDYKLKKDLIIKVKILDVRER
KLFTRIQKIIGDANKAIDRIISIAYEFDIKPDFNKQTIDNAQMVAKPIDYNDPLVKRRKK
IITDKNLVTIDGADSKDLDDAVYVEKTATGYKLFVAIADVSYYVTPFSPLDNTALFRGNS
VYLANKVIPMLPEKLSNGVCSLNPNEDKLCMVAEMDFDMNGNMIHKKVYESVMNSKARLT
YNEVNELFSKGTSSRSQEIIDMLMVAKELHELIDAERSARGAIEFDVPEPKIILDKDSNV
IDIVPRGRGVSEKLIENFMVSANEAVAQVIFEKELPYVYRNHGIPKEENLIEWHTMIRNL
GINVKLTDLDKINPKTIRSALKQIEEQVTDQTERDVINVTLLRFMEKAAYELDNIGHFGL
ASRCYTHFTSPIRRYSDLMVHRFLKQYLIDKDLRDFKLEQNTKFINKACNIINETEKQAV
NAEREVNKVCMAEYMTHHIEKEYTGVVAAVLKFGLFIQLENCVEGLIHISELPDYTFDEK
ANIMVDKQNKMFRLGQKVKIKVKNADVKKRIIDFVLA
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgagagaaaaaatattacagaaattagaaaaagacgaacgagtacatttaaatgattta
ttaaaactaagcaatagtgatcaagaattggtaacaaatgctttaaaagaattacaagct
gaatatcaaattgcatgaactaaagaaaatgttgtttataaaattggtgacaaatataaa
attggttctattaaaatcaatgataaaggttttggatttgtaaaggatttaaatgatatt
gaaaatgattattttgtagctccaaatgcaattaatggagcaatttcaacagatgaagtt
gtctttacattagaaaaagaagcagacggtcgtttaaaagcaaacgtcgaagaaatcgct
ttaagaaccaaaacttatttaattggagaaatccatgaaagtaaagatggtcgtttttta
gatttcgtggcaaatgaaccagggtttaaaaattatcgtattgtcatggttaactcaaag
gactataagttaaaaaaagatttaattataaaggtaaaaatccttgatgttagagagcga
aaactatttacaagaattcaaaaaattattggtgatgctaataaagccattgatagaatt
atttcaattgcttatgaatttgatattaaaccagattttaataaacaaacaatcgataat
gcacaaatggttgcaaaaccaattgattataatgatcctttagttaaaagacgtaaaaaa
ataattacagataaaaatttagtaacaattgatggagctgactcaaaagatttagatgat
gcagtttatgttgaaaaaacagcaactggatataaattatttgtagcaattgctgatgtt
agttattatgtgacaccattttctccattagataatactgctttatttagaggaaactca
gtttatctggccaataaagtaattccaatgttaccagaaaagttatcaaatggagtatgt
agtttaaatccaaatgaagataaattatgtatggttgcagaaatggattttgatatgaat
ggaaatatgattcacaaaaaagtctatgaatcagttatgaattcaaaagcacgtttaact
tataatgaagttaatgaattatttagtaaaggtacttcttcaagaagccaagaaattatt
gatatgttaatggtggccaaagaattacatgaattaattgatgcagagcgttcagcaaga
ggtgccattgaatttgatgttccagaaccaaaaattattttagataaagatagtaatgtg
attgatattgttccaagaggaagaggagtttcagaaaaactaattgaaaactttatggtt
agtgctaatgaagcagtggctcaagtaatttttgaaaaagaattaccatatgtttatcga
aaccatggaattccaaaagaagaaaacttaattgaatgacatacaatgattagaaattta
gggatcaatgttaaattaactgatctagataaaattaatccaaaaacaattcgcagtgct
ttaaaacaaattgaagaacaagttacagatcaaacagaaagagatgttattaatgttact
ttattgcgttttatggaaaaagccgcttatgaattagataacattggtcactttggattg
gcaagtagatgttatactcactttacaagtccaattagaagatatagtgatttaatggta
catagattcttaaaacaatatttaattgataaagatttaagagactttaagttagagcaa
aatactaagtttattaataaagcatgtaatataattaatgaaacagaaaaacaagcagtt
aatgctgaaagagaagttaataaagtgtgtatggctgaatatatgacccatcacattgaa
aaagaatatactggagttgttgcagctgttttaaaatttggtctatttattcaattagaa
aattgtgttgaaggattaattcatatttcagaattaccagattacacttttgatgaaaaa
gccaatattatggttgataaacaaaataaaatgtttagattaggacaaaaagttaaaatt
aaagtcaaaaatgcagatgttaagaaaagaatcattgattttgttttagcttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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