KEGG   Stanieria cyanosphaera: Sta7437_2278
Entry
Sta7437_2278      CDS       T02406                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
scs  Stanieria cyanosphaera
Pathway
scs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sta7437_2278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scs03019]
    Sta7437_2278
   03009 Ribosome biogenesis [BR:scs03009]
    Sta7437_2278
Enzymes [BR:scs01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Sta7437_2278
Messenger RNA biogenesis [BR:scs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Sta7437_2278
Ribosome biogenesis [BR:scs03009]
 Prokaryotic type
  rRNA processing factors
   Sta7437_2278
SSDB
Motif
Pfam: RNase_E_G TMEM132D_C
Other DBs
NCBI-ProteinID: AFZ35822
UniProt: K9XVX5
Position
2582158..2584107
AA seq 649 aa
MPKQIIIAEQHHIAAVFWEDQIQELIVATGNQQVSDIYLGAVENVIPGIDAAFVNIGDAE
RNGFIHVTDLGPLRLKKTAGAITELLTPQQTVLVQVMKEPTGNKGPRLTGNITLPGRYLV
LMPYGKGVKLSRRIRDDNERNRLRALAILIKPAGMGLLVRTEAEGKAEEAIMEDLEFLQK
QWESIQYQASSTRPPALLNRDDDFIQRVLRDMYSADVNSIVVDSPAGVKRVKQHLTNWAG
GRSPQGVFIDHHRERQPILEYYRVNAAVREALKPRVELPSGGYIIIEPTEALTVIDVNSG
SFTRSATARETVLWTNSEAATEIARQLRLRNIGGVIIVDFIDMDSRRDQLKLLEHFNKAL
KADKARPQIAQLSELGLVELTRKRQGKNIYELFGQTCPTCGGLGHLVHLPGKSEGESLET
PPVTPPAAIPSLPYTQENNISDYSLDLGYDPSPSPPELLNHPNYQEQGNNNRRRRRRRLN
DILLKDEQTELNPVVITRDFEGDTPNYVPEERKSRVQSNRPSRRDETNLEKVSVEMSDLE
QEVYALMGISPLVRLEREFKDPKSVLVLIQNPTDGNQATATIETDSGIESVTDVDEPVVS
EETETITPPELKIEVTTEAEVEADTEAEDNNNARRRRRRRSSAQTELSV
NT seq 1950 nt   +upstreamnt  +downstreamnt
atgccaaaacaaattattattgcggaacagcatcatatcgccgccgttttttgggaagat
caaattcaggaattgattgttgccacaggcaatcaacaggtgagcgatatttatcttggt
gcagttgaaaacgttattcctggtatagatgctgcctttgttaatataggcgatgcagaa
cgcaacggttttatccatgttacagatttaggacctctacgtttaaaaaaaacggccgga
gcaattactgaactattaactccacaacaaacagttttagttcaggtaatgaaagaacca
actggtaacaaaggaccaagactcactggtaatatcaccttgcctggacgatatttagtc
ttaatgccttacggtaaaggagtcaaactttcacgaagaattcgagatgacaatgaacgt
aaccgtttacgcgctttagccattctcattaaacctgctggcatgggtttacttgtgaga
accgaagctgaaggtaaggctgaagaagcaattatggaagatttagaatttctccaaaaa
cagtgggaatcaattcaatatcaagcctcttctaccagacctccagcgctgcttaatcga
gatgatgattttattcagcgtgttttgcgagatatgtactccgctgatgttaatagcatt
gtggttgattcaccagcaggagttaaacgagtcaaacaacatttaaccaattgggctggt
ggtcgttctcctcaaggagtttttatcgatcatcatcgagaacgtcaaccaatcctagag
tattatcgagtcaatgcagcagttcgtgaagcacttaaacctagagtagaattaccatca
ggtggttatattatcattgaacccaccgaagccttaacggtaattgatgtaaactctggc
tcttttactcgttctgctactgctcgtgaaactgttttatggactaacagtgaagctgca
accgaaattgctcgtcaattgcgtctacgtaatattggtggtgtgatcattgtcgatttt
atcgatatggactcacgacgagatcaactaaaactgttagaacattttaataaagctctc
aaagcagataaagctagaccccaaattgcccaactctcggaacttggtttagtagaatta
actcgtaaacgccaaggaaaaaatatttatgaattatttggtcaaacttgtcctacttgt
ggtggtttaggacatttagttcatttaccaggaaaatctgaaggagagtctttagaaact
ccaccggttacaccaccagcagcgattcccagtctgccttatactcaagaaaataacatt
tccgattattcgctcgatttaggttacgatcctagtccttcccctccagaattactcaat
catcccaactatcaagagcaaggaaataataatcgtcgtcgtcgtcgtcgccgtcttaat
gatattttgctcaaagacgagcaaactgaattaaatcctgtcgttataactcgcgatttt
gagggagatactcctaattatgtacctgaagaacgtaaatctagggtgcaatcaaatcgt
ccttctcggcgagatgaaactaatttagaaaaagtttctgtagaaatgagtgatttagaa
caagaagtttatgctttgatgggcatatctcctttagttcgtttagaacgagagtttaaa
gatcctaaatcagttttagttttgattcaaaatcctactgatggcaatcaagcaacggca
acaattgaaacagattctgggatagagtctgttactgatgttgatgaaccagtagtgagc
gaggaaactgaaacgataactcctcctgaattaaaaatagaagtgacaacagaagcagaa
gtagaagcagacacggaagcagaagacaataataatgcacgccgtcgtcgccgtcgtcgt
tcatcggcacaaacagagttatcagtttaa

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