KEGG   Streptomyces cattleya NRRL 8057: SCAT_5457Help
Entry
SCAT_5457         CDS       T01646                                 
Gene name
ligD
Definition
DNA polymerase LigD, ligase domain
Orthology
K01971  
DNA ligase (ATP) [EC:6.5.1.1]
Organism
sct  Streptomyces cattleya NRRL 8057
Pathway
Base excision repair
Nucleotide excision repair
Mismatch repair
Non-homologous end-joining
Class
Genetic Information Processing; Replication and repair; Base excision repair [PATH:sct03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sct03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sct03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sct03450]
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
5866089..5867030
Genome map
AA seq 313 aa AA seqDB search
MPDRVTPMLAVLSDRRHFDDTWVLERKLDGVRAIGFRDGDTVRLASRTGQRLENTYPEIV
RALADQPQRAFVVDGEIVALDDGRTSFERLQRRMQLTRPSAALASGVAVTYFLFDLLHLA
GHDTTGLPLRSRKELLREAVRYTGPLRYTEHHTATGDAGQLLDAACAQGWEGLIAKRADG
RYQQRRSSDWLKLKCLTAQEFVVGGYTEPAGSRAGFGALLLGYHQGGRLRYAGKVGTGYD
TATLRRLRGLLDERGLTEPPFAEPVRERGAHWVRPDLVVQVAFTEWTRDGRLRAPRYLGL
RQDKRPERVVREG
NT seq 942 nt NT seq  +upstreamnt  +downstreamnt
gtgccggaccgggtcaccccgatgctcgccgtgctctccgaccgccgccacttcgacgac
acctgggtgctggagcgcaaactcgacggcgtccgggcgatcggcttccgggacggcgac
accgtacgcctggcctcccgcaccgggcagcgcctggagaacacctacccggagatcgtg
cgggcgctggccgaccagccgcagcgggccttcgtggtggacggcgagatcgtggcgctg
gacgacggacgcaccagcttcgaacggctccagcgccgcatgcagctcacccgcccgtcc
gccgcgctcgccagcggggtggccgtcacctacttcctgttcgacctgctgcacctggcc
ggacacgacaccaccgggctgccgctgcgctcccgcaaggaactgctgcgcgaggcggtc
cgctacaccggcccgctgcgctacaccgaacaccacaccgccaccggtgacgccgggcag
ctcctggacgccgcctgcgcccaggggtgggaggggctgatcgccaaacgcgccgacggc
cgctaccagcagcgccgctcctccgactggctcaagctcaaatgcctcaccgcccaggag
ttcgtcgtcggcggctacaccgagccggccggcagccgcgccggcttcggcgccctgctg
ctcggctatcaccagggcggacggctgcggtacgcgggcaaggtgggcaccgggtacgac
accgcgacgctgcggcggctgcgcgggctgctggacgaacgcgggctgacggagccgccg
ttcgccgaaccggtccgggaacgcggcgcgcactgggtccgccccgacctcgtggtgcag
gtggcgttcaccgagtggacccgggacggcagactgcgggccccgcgctacctggggttg
cggcaggacaagcggccggagcgggtggtgcgggaggggtga
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