KEGG T02718: SCE1572

Sorangium cellulosum So0157-2: SCE1572_17605

Entry

SCE1572_17605     CDS       T02718

Name

(GenBank) hypothetical protein

K03654

ATP-dependent DNA helicase RecQ [EC:5.6.2.4]

Organism

scu Sorangium cellulosum So0157-2

Pathway

scu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:scu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCE1572_17605
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scu03019]
    SCE1572_17605
   03400 DNA repair and recombination proteins [BR:scu03400]
    SCE1572_17605
Enzymes [BR:scu01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SCE1572_17605
Messenger RNA biogenesis [BR:scu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SCE1572_17605
DNA repair and recombination proteins [BR:scu03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      SCE1572_17605

SSDB

Motif

Pfam:

DEAD Helicase_C HRDC RQC RecQ_Zn_bind ResIII HEM4

Other DBs

NCBI-ProteinID:

AGP36151

UniProt:

S4XUX7

Position

complement(4979236..4981353)

AA seq 705 aa
MIFAEPPSPIVTERLAPSPLRPPEGPPPSIDAVLADRFGIASFRPWQREAIDALLGGAGR
VLVVAPTGGGKSLCYQLPAVALPGTTLVLSPLISLMEDQVRALEARGIPATFVASSLPRE
ENGRRLAALRRGEYKLVYAAPERLAFDGFLEALAESRLSLVAVDEAHCIVQWGHDFRPDY
LRIGAALARLRPPRVLACTATATPDARDEIIRRLGWPRSSPGDDDGVAGEPGPEGPPPKV
ILRGFARPNLHLQVSAVDGPREAGRLTARALLDALGDPGRPRGAGIVYAATRKGAERLAE
ALRDAGWNAEAYHAGLAPESRARLSAGFADRSLSVVVATNAFGMGIDRPDVRLVVHAQPP
SSIEAYYQEVGRAGRDGDPARGLLLFAPADIALRRRLCQLGEGGAEASADDAARAWGLFR
ELLRYIDAATCRHDFILRYFGDEAESLGGCGHCDVCLEVDALEESDPAALARDNDLVRRA
LAGVARAKGGAGMQAIASMLIGESNERVRRMGLDRLSTFGVLEGKRHDEAMSILRVLLAN
AWIDLTTGEFPVPLVTPSGWRVMRGEVPARVRLPLPAARRKPPRRPASPSPAARPAPAAR
ASSAAAHDRAPAAPVAASPAQADPGVELEEGDVPLFEALRAHRAALAKEKSLPAYVIAHD
RTLREIARIRPASLDDLALARGMGQAKISSYGEGILRVVREFSGA

NT seq 2118 nt +upstreamnt +downstreamnt
atgatcttcgctgagcccccctcgccgatcgtgaccgagcgcctcgccccctccccgctg
cgcccccccgagggcccgcccccgtcgatcgacgccgtgctcgcggatcggttcggcatc
gcgtcgttccggccgtggcagcgcgaggcgatcgacgccctgctcgggggcgcgggccgc
gtcctcgtcgtcgcgccgaccggcggcggcaagtcgctctgctaccagctcccggccgtc
gccttgccgggcacgacgctcgtcctgagcccgctcatctccctgatggaagatcaggtg
cgcgcgctcgaggcgcgcggcatccccgcgacgttcgtcgcctccagcctcccgcgcgag
gagaacggccgccgcctcgccgccctgcgccgcggcgagtacaagctcgtctacgccgcg
cccgagcgcctcgcgttcgacggcttcctcgaggcgctcgccgagagccggctctcgctc
gtcgccgtcgacgaggcgcactgcatcgtccagtgggggcacgacttccggcccgactac
ctgcgcatcggcgccgcgctcgcgcggctccgcccgccccgggtcctcgcctgcaccgcg
acggcgacccccgacgcgcgcgacgagatcatccggcgcctcggctggccgcggagctcg
cccggcgacgacgacggcgtcgcgggcgagcccgggccggaagggccgccgcccaaggtc
atcctgcgcggcttcgcccggcccaacctccacctgcaggtctccgcggtggacggcccg
cgcgaggccgggcgcctcacggcgcgcgcgctcctcgacgccctcggcgaccccgggcgg
ccccgcggcgcgggcatcgtgtacgccgccacccgcaagggggcggagcgcctggccgag
gcgctccgcgacgccggctggaacgccgaggcgtaccacgccggcctcgcccccgagtcg
cgcgcgcgcctgtcggccggcttcgccgatcgcagcctctccgtggtggtcgccacgaac
gccttcggcatgggcatcgaccggcccgacgtgcgcctcgtcgtgcacgcccagccgccg
tcgtcgatcgaggcctactaccaggaggtcggccgcgccggccgcgacggcgacccggcc
cgcggcctgctcctgttcgcgcccgcggacatcgcgctgcgccgccggctctgccagctc
ggcgaggggggcgccgaggccagcgccgacgacgccgcgcgcgcgtgggggctcttccgc
gagctcctccgctacatcgacgccgcgacgtgccggcacgacttcatcctccgctacttc
ggcgacgaggccgagtcgctcggcgggtgcggccactgcgacgtctgcctcgaggtcgac
gccctggaggagagcgacccggccgcgctcgcccgcgacaacgacctcgtgcgccgcgcg
ctcgccggcgtcgcgcgggcgaagggcggcgccgggatgcaggcgatcgcgtcgatgctc
atcggcgagtcgaacgagcgcgtccgccgcatggggctcgaccggctctccaccttcggc
gtcctcgaggggaagcgccacgacgaggccatgtcgatcctgcgggtcctgctggccaac
gcctggatcgatctcaccaccggcgagttccccgtcccgctcgtcacgccctcgggctgg
cgcgtgatgcgcggcgaggtgcccgcccgggtgcgcctcccgctccccgccgcgcgccgg
aagccgccgcgccgaccggcgtccccctcgcccgccgcgcgccccgcgccggccgcgcgc
gcgtcctccgcggcggcccacgaccgcgcgccggccgcgcccgtcgccgcctcgcccgcg
caggcggaccccggggtcgagctcgaggagggggacgtcccgctgttcgaggcgctgcgc
gcccacagggccgcgctcgccaaggagaaatcgctgcccgcctacgtcatcgcgcacgac
cggacgctccgggagatcgcgcggatccggcccgcgtcgctcgacgatctcgcgctcgcg
cgcggcatggggcaggcgaagatctcgagctacggcgagggcatcctccgcgtggtgcgg
gagttctcgggcgcctag

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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