KEGG   Streptomyces sp. CdTB01: AS200_00845
Entry
AS200_00845       CDS       T04240                                 
Name
(GenBank) ribonuclease
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
scx  Streptomyces sp. CdTB01
Pathway
scx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AS200_00845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scx03019]
    AS200_00845
Messenger RNA biogenesis [BR:scx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AS200_00845
SSDB
Motif
Pfam: RNase_J_C Lactamase_B Lactamase_B_2 RMMBL DUF1732
Other DBs
NCBI-ProteinID: ALV30801
UniProt: A0A0U3EH76
Position
complement(210026..211711)
AA seq 561 aa
MSHPHPELKTAPPLPEGGLRVTALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEETQPGV
DVILPDFTSIRDRLDDVVGIVLTHGHEDHIGGVPYLLRERRDIPVIGSKLTLAFLEAKLK
EHGIRPRTVRVREGDRRGFGPFDCEFVAVNHSIPDSLAVAIRTRAGMVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSS
FASHVHRIQQVLDAAHQHGRKVAFVGRSMVRNMGIARDLGYLKVPSGLVVSTKELEKLPD
HKVTLVCTGSQGEPMAALSRMANRDHMIRIGKDDTVLLASSLIPGNENAIYRVINGLTRW
GAHVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEWRHLRANGDLAIRTGVDPE
RVVIAEDGVVVDLVDGRASITGKVPAGNVYVDGMEVGGATEASLKDRLTLAAEGVVTVVA
IVDADTGALAEAPDFLARGFVHDDATFEPVIPVIEKTLATAAEEGVGDARQLEQLVARAV
ANWAFRTHRRRPLIIPVIIDA
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgagccatccgcaccccgaactgaaaaccgccccaccccttcccgaaggagggctgcgg
gtcactgccctgggcggcctgggtgagatcggccgcaacatgaccgtcttcgagcacgcc
ggcaagctgctcatcgtcgactgcggcgtgctgttccccgaggagacccagcccggtgtg
gacgtgatcctgccggacttcacctcgatcagggaccggctggacgacgtcgtgggcatc
gtcctcacccacggccacgaggaccacatcggcggcgtgccgtacctgctgcgcgagcgg
cgcgacatccccgtcatcgggtccaagctgacgctggcgttcttggaggccaagctcaag
gagcacggcatccggccgcgcacggtacgggtgcgcgagggcgaccggcgcggtttcggg
cccttcgactgcgagttcgtggcggtcaaccactccatccccgacagtctcgcggtcgcg
atccgcacccgggccgggatggtgctgcacaccggcgacttcaagatggaccagttccct
ctggacgaccgcatcaccgacctgcgtgccttcgcccgcctgggcgaggagggcgtggat
ttgttcctcaccgactccaccaacgccgaagtccccggcttcaccacctccgagcgggag
ctgaacccggcgatcgagcaggtgatgcgcaccgcgccgcgccgggtgatcgtctccagc
ttcgccagccacgtgcaccgcatccagcaggtcctggacgccgcccaccagcacggccgc
aaggtcgccttcgtcggccggtcgatggtccgcaacatgggcatcgcccgtgacctcggc
tacctgaaggtcccctccggcctggtggtgagcaccaaggagctggagaaactcccggac
cacaaggtcaccctggtgtgcaccggctcccagggcgagccgatggccgcgctgtcacgg
atggccaaccgcgaccacatgatccgcatcggcaaggacgacaccgtcctgctcgccagc
tccctcatccccggcaacgagaacgccatctaccgggtgatcaacggactcacccggtgg
ggcgcccacgtggtgcacaagggcaacgccaaggtgcacgtctccgggcacgccagcgcc
ggcgaactcgtctactgctacaacatcgtcaaaccccgcaacgtcatgcccgtgcacggc
gaatggcgccacctgcgggccaacggcgacctcgccatccgtaccggcgtcgatcccgaa
cgggtcgtcatcgccgaggacggcgtcgtcgtcgacctggtcgacgggcgcgcgtccatc
accggcaaggtccccgccggcaacgtctacgtggacggcatggaagtcggcggcgccacc
gaggcctccctcaaggaccgcctcaccctcgccgccgagggcgtggtcacggtggtggcg
atcgtcgacgccgacaccggcgccctcgccgaggccccggacttcctcgcccggggcttc
gtccacgacgacgccaccttcgagccggtcatccccgtcatcgagaagaccctggccacc
gcggccgaggaaggcgtcggggacgcccgccaactcgaacaactcgtcgcccgcgccgtg
gcgaactgggcgttccgcacccaccgccgcaggcccctcatcatccccgtcatcatcgac
gcctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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