KEGG   Saccharophagus degradans: Sde_0073
Entry
Sde_0073          CDS       T00335                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sde  Saccharophagus degradans
Pathway
sde03030  DNA replication
sde03410  Base excision repair
sde03420  Nucleotide excision repair
sde03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sde_0073
   03410 Base excision repair
    Sde_0073
   03420 Nucleotide excision repair
    Sde_0073
   03440 Homologous recombination
    Sde_0073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sde03032]
    Sde_0073
   03400 DNA repair and recombination proteins [BR:sde03400]
    Sde_0073
Enzymes [BR:sde01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Sde_0073
DNA replication proteins [BR:sde03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Sde_0073
DNA repair and recombination proteins [BR:sde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Sde_0073
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sde_0073
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5 HHH Ribosomal_60s
Other DBs
NCBI-ProteinID: ABD79337
UniProt: Q21PP2
Position
92145..94925
AA seq 926 aa
MSNSSLPLLLVDGSSYLYRAFHAMPPLTTSSGQPTGAVRGVVNMLRKLAKDYPESPIAVI
FDAKGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTY
AQQATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLIIDFLA
LMGDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKLEDNRD
KAFLSYELATIKLDVELEHSLEELIPVDPDNDALLALFTELEFKGWVTELSKGGGTKAKK
ASPNAKQAAEEAPAAAPEEAVEINRDNYETILTEASLEAWVDRLSKAELFAFDTETTSLN
YMEAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKLKPLLEDENVKKVGQNLK
YDASVLANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAK
QLTFNQIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVER
TGALIDATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFEKLGIPVIKKT
KTGAPSTAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQA
VTATGRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEG
LTNAFNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAFGLARQLHIGRN
DAQRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEINASNGMRRQAAERT
AINAPMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEVAEDQIEPVTATLCD
IMSAALKLDVPLLVEAGVGMNWDEAH
NT seq 2781 nt   +upstreamnt  +downstreamnt
atgagtaattcgtcgctaccgctacttcttgttgatggctcttcgtatttatatcgagct
ttccatgcaatgccgccacttaccacctccagtgggcagcccacgggcgcggtgcgcgga
gtagttaatatgttgcgcaagctcgccaaggattaccccgaaagcccaatagcagtaatt
tttgacgccaagggcaaaaccttccgcgatgatatttatagcgattacaaagccaatcgc
ccgccaatgcccgatgatttgcgcgcacaaattgagccgttacacaccattattcgcgca
atgggcttgccgcttattattcaagatggggtagaagccgacgatgtaattggtacttac
gcccaacaggccaccgaaaaaggcataccggttgtggtatctactggcgataaggacatg
gcgcagttagtcagtgagcacgtaacacttgtgaacaccatgaccgaaaccgtcatggat
attgccggtgttaacgaaaaatttggtattccgccttcgctaattatcgatttcttggcg
ttaatgggcgataaggtcgacaatattcctggcgtgcccggcgtaggtgagaaaacagcc
ttagcgctactgcaaaacttaggcagtgtagaagatatttacgccaatttagacaaggta
cccaccttagaggtgcgcggtgcaaaatcgttggcgaaaaagctcgaagataatcgcgac
aaagcgtttttatcgtacgagctggcaaccatcaaactagatgtagagctagagcacagc
cttgaagagttaattcccgtcgacccagacaacgatgcgttgctggccttgtttaccgaa
ctggaatttaaaggttgggttaccgagctctcgaaagggggcggcactaaagccaaaaaa
gctagccccaacgctaagcaggcagcagaagaggcgccagccgccgcgcccgaagaagcc
gtagaaattaaccgcgataactacgaaaccatcttaaccgaagccagcttagaggcgtgg
gtagaccgcctaagcaaagcagagctgttcgcgtttgataccgaaactaccagccttaac
tatatggaagctaaagtggtgggtgtttcgtttgctgtggccccgggagaggccgcctat
gtgccgtttggacacgattacttgggcgcgccagagcagctaagtgaagagcaagtgctg
ggtaagctaaagccgttacttgaagacgaaaatgttaagaaagtcggccaaaatcttaaa
tatgacgcaagtgtgttggcaaatcacggtattgccctgcagggtatagcgttcgatacc
atgctggaatcttacgtggtgaactccaccgccaaccgtcacgatatggatacccttgcg
ctggcgcatttaggtcacaccaatatttcatttgaagaaattgccggtaagggcgctaag
caacttacttttaaccaaattcaactcgaccaagccgcaccttacgccgccgaagatgcc
gacataactctgcgtttgcaccaagcgctatggccacaagtggaggccgtagaaggaata
aagtctttgttcgaaaatgtcgagctgccgttggtgccggtgttatctaaggtagagcgc
acaggcgcattaattgatgccactattctcggccagcaaagtgccgagctggccgccgac
ttagagcgcattcaacgcgaggcgtgggaattggccggtgaagagtttaatttagcctcg
cccaaacaattgggtgtaattttgttcgaaaagctgggcatccccgttattaaaaagacg
aaaaccggcgccccctcaaccgcagaagaagtgctgcaagagctggctttagattacccc
ttgcccgcactgttactggagcagcgcggcttggcgaagttgaaatctacttataccgac
aagctgccaaccatgattaacccccatactgggcgggtgcatacatcctataaccaagca
gtaacggcgactgggcggttaagttctaccgaccccaatttgcagaatattcctattaaa
accgaagctgggcggcgtgtgcgcaaggcgtttatcgcccccgagggttaccgcatagtc
gcggctgactactcgcaaattgaattgcgcattatggcgcacctatcgggcgacgaagga
ttaaccaacgcgtttaaccaagggttggatgtgcacagtgccactgccgccgaagtattt
ggcaccagtgtagagagcgttaccccagagcagcgccgcagcgccaaagccattaacttt
gggcttatatacggcatgtcggcgtttggcttggcgcgccagctgcacattggtcgcaat
gatgcccagcgctacatagatacctatttcgatcgctaccctggtgttgcacgctatatg
gaagatattcgtgtattcgcgaaggagcatggctacgtagaaacgttaatgggccgcagg
ttgtatttgccagaaattaacgccagtaacggtatgcgcaggcaggcggcagagcgcacc
gcaatcaacgcgcccatgcaagggtctgcggcagatatcatcaaaaaagcgatgattgac
gtcgataagtggctatctaccctaaaagtagacgcgaaaatgataatgcaggtacacgat
gaattggtgctagaggttgccgaagaccaaatagagccagtaaccgccaccctgtgcgat
attatgtcggcagcgcttaagttagatgtaccgctattggttgaagccggtgtggggatg
aactgggatgaggcgcactag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (132)   
   KEGG ORTHOLOGY (1)   
   RefGene (129)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (150)   

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