KEGG S.degradans: Sde

Saccharophagus degradans: Sde_1028

Entry

Sde_1028 CDS S.degradans

Definition pantoate-beta-alanine ligase (EC:2.7.7.7)

Orthology K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]

Pathway sde00230 Purine metabolism
sde00240 Pyrimidine metabolism
sde01100 Metabolic pathways
sde03030 DNA replication
sde03430 Mismatch repair
sde03440 Homologous recombination

Class Metabolism; Nucleotide Metabolism; Purine metabolism [PATH:sde00230]
Metabolism; Nucleotide Metabolism; Pyrimidine metabolism
[PATH:sde00240]
Genetic Information Processing; Replication and Repair; DNA
replication [PATH:sde03030]
Genetic Information Processing; Replication and Repair; Mismatch
repair [PATH:sde03430]
Genetic Information Processing; Replication and Repair; Homologous
recombination [PATH:sde03440]
Genetic Information Processing; Replication and Repair; DNA repair
and recombination proteins

SSDB

Motif Pfam: DNA_pol3_alpha PHP tRNA_anti

Other DBs NCBI-GI: 90020675
NCBI-GeneID: 3967782
JGI: Sde1028
UniProt: Q21LY9

Position complement(1313031..1316120)

AA seq 1029 aa
MQYTQLQTLTNYSFLKSASHPQELVEEAKILGYHALAITDECSLAGIVKAHVAAKELNLK
LLVGSYFELTNGFKIIAIAPNRQAYAELSGFISLARRRASKGEYEAHLSDLRFRLQQCLI
IWLPYFNNHISDVDVTTLATAFKQRLWIGVSHTLIAAEQRLFSHLNKLANALHVPLVASG
LTYMHNKNCKPLLDILTAIRENTPIQQLGTRLHSNAEVNLKPLHELNQLYPEALIQQTQV
IAQLCNFSLDELRYQYPKELVPSNTTPIAHLKKLVKEGEAKRWPQGTPEHAQKIIAMELG
LIEEMQYEYYFLTVHDIVHFARSKNILCQGRGSAANSVVCYCLFITEIAPGQINVLFERF
ISKERNEPPDIDVDFEHQRREEVIQYIYQKYGRERAALAATVITYRSRSAIRDVGKAMGL
EAGLVGQLAKSLAWWDRTGDLIKRMESFGLNPETQKTMQHFFALVQQILGFPRHLSQHVG
GFIITQDKVSDLVPLENASMPDRTIIQWDKYDIEAMGLLKVDVLALGMLTALRKSLETVS
QYDAAVYSLATIPREDPATYAMLSKGDSIGVFQVESRAQMSMLPRLRPKCFYDLVIEIAI
VRPGPIQGDMVHPYLRRRDGIEEVHYQNDKIKSVLEPTLGIPIFQEQAIRLAMVAADFSG
GEADQLRRAMASWGKNGSLLKFEDKFIQGMLNNGYPLDFAHRLFEQIKGFGGYGFPESHS
ASFALLCYASSWLKCHHPAAFYCALLNSQPMGFYSASQLIQDARRHKVVVLPVEVNASGY
ESHVVLTNHNTSAPPNIIQLGLHMIKGLSILTAERIVLAKGDKPFTTLKELSLRAQLSSA
DLQLLASADALHKLTGNRHNSRWQAAALMPHSPLLDGAELEEDALNTPAPSIEKNIQTDF
NSTGLSLRLHPMALLRAQQPFNRCKKQSELASIHNGGFAQVAGLVTGRQRPGTAKGTLFL
TLEDETGNINIVVWTSTQERCRQALLTAKLLLVKGRLETKDNVTHIIAGQMFDYSHMLSE
FDIKSRDFH

NT seq 3090 nt +upstreamnt +downstreamnt
atgcaatacacccaactacaaaccctaaccaactacagcttcctaaaaagcgcatcacac
ccgcaggaacttgtagaagaagccaaaatactcggctaccacgccctcgccattaccgac
gagtgctcgctggcgggtattgtaaaagcgcatgtcgcagcaaaagaactcaacctaaag
ctactagtaggtagttattttgaattaaccaacggctttaaaataatcgccatcgccccc
aaccgacaagcctacgcagaattatcgggttttatttctttagcgcgacgacgtgcaagt
aaaggcgagtatgaggcgcatttatccgatttacggtttcgtttacaacagtgtttaatt
atttggctgccgtattttaacaaccatattagcgatgtagatgtaaccaccctcgcaacc
gcatttaagcaacggctgtggataggcgttagccatacacttatcgccgcagaacaacga
ttattcagccacttaaataaattagcgaacgcactacatgtgcccctagtggcaagcggg
cttacctatatgcacaataaaaattgtaaacccttgctagatatattaaccgccattaga
gagaacacacctatccaacaattgggaacacgcttacacagcaatgcagaagtgaactta
aaaccgctgcatgaacttaatcaactttaccccgaagcgttaatccagcaaacgcaggtt
attgcacaactttgtaatttctctttagatgagttgcgttaccaatacccaaaagaactt
gtgcccagcaatacaacgccaatagcccacttaaaaaaactggttaaagaaggggaagcc
aagcgctggccacaaggcacccccgaacacgcgcaaaaaattattgctatggagctaggc
ttaattgaggagatgcaatacgaatattattttttaaccgtacacgacatagtgcacttt
gctcgcagtaaaaatattttatgccaagggcgaggctcggccgccaattcggtggtgtgc
tactgcttgtttattaccgagattgcccccgggcaaattaacgttttatttgagcggttt
atctctaaagagcgcaatgaaccgccagatattgatgtagactttgaacaccagcgccgc
gaagaagtaattcagtatatttatcaaaaatatggtcgtgagcgcgcagctttagccgca
acagttataacctaccgcagccgcagcgccattcgcgatgtaggtaaagctatgggccta
gaggcaggccttgtggggcaattagcaaaatcgctagcttggtgggatagaactggcgat
ttaattaaacgcatggagtcttttggccttaacccagaaacacaaaaaaccatgcagcat
ttttttgccttagtgcaacagatacttggctttcctcgccacttatcgcagcacgtgggt
ggttttattattacgcaggataaggtcagcgatcttgtgccgctagaaaatgccagcatg
cccgaccgcactattattcagtgggataaatacgacatagaagccatgggcttactaaaa
gtggatgtgttagcgttgggtatgcttaccgctttgcgtaaatcattagaaaccgttagc
cagtacgacgcagcagtttactccctcgccactattccacgtgaagatccagccacttac
gccatgctaagtaaaggcgatagcattggtgtgtttcaagtggaatcgcgcgcgcaaatg
tctatgctgccgcgcttacgacctaagtgcttttacgatttggttattgaaattgccatt
gtaaggccagggcctattcaaggcgacatggttcacccttatttacgccggcgcgacggc
attgaagaggtgcactaccagaacgataaaataaaaagcgtattggagcccaccctcggc
attcctatttttcaggagcaagctattcgcttggccatggtagctgcagattttagcggc
ggcgaagcagaccaattgcggcgggccatggcaagctggggcaagaatggtagcctacta
aaattcgaagataaatttattcaaggtatgctaaacaacggctacccacttgattttgct
caccgtttattcgagcaaataaaaggctttggcggttatgggtttcctgaatcacactcg
gccagttttgctttattgtgctacgcctcatcgtggctaaaatgccaccacccagcggca
ttttattgcgcactacttaatagccaaccaatggggttttactctgcctcgcaacttatt
caagatgctcgtcgccataaagtcgttgtattaccggtagaagttaatgctagcggttac
gaaagccacgtagtattaaccaaccacaatacatcggcgccccccaatattattcagctt
ggtttgcatatgattaagggcttaagcatactcaccgcagagcgcattgtgcttgctaaa
ggcgataagccgtttactacattaaaagagttaagcctacgcgcacaacttagcagcgcc
gatttacaactgctggcatccgccgatgcattgcacaaacttaccggcaacagacacaac
agtcgttggcaggctgccgcccttatgccgcacagcccactgctagacggcgccgaacta
gaagaagacgcacttaatactcctgcgcccagtatagaaaaaaatattcaaactgatttt
aacagcacggggctttctttgcggctacaccctatggctttgctgcgcgcccagcagccc
tttaaccgctgtaaaaaacaaagcgaattggcaagtatacacaacggtggctttgcccaa
gttgccgggctagtaaccggcaggcagcgcccaggcacagccaaaggcacattgttttta
accctagaagacgaaaccggcaatataaatattgtagtgtggaccagcacccaagagcgc
tgccgccaagccttacttaccgccaagctattattggttaaaggccgcttagaaacgaaa
gacaacgtcacccatattattgcagggcaaatgtttgattactcgcacatgctaagtgaa
tttgatattaagtcgcgcgactttcattaa

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-SDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)

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