KEGG S.degradans: Sde

Saccharophagus degradans: Sde_1606

Entry

Sde_1606 CDS S.degradans

Gene name fadA

Definition 3-ketoacyl-CoA thiolase (EC:2.3.1.16)

Orthology K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]

Pathway sde00071 Fatty acid metabolism
sde00280 Valine, leucine and isoleucine degradation
sde00281 Geraniol degradation
sde00362 Benzoate degradation via hydroxylation
sde00592 alpha-Linolenic acid metabolism
sde01100 Metabolic pathways

Class Metabolism; Lipid Metabolism; Fatty acid metabolism [PATH:sde00071]
Metabolism; Lipid Metabolism; alpha-Linolenic acid metabolism
[PATH:sde00592]
Metabolism; Amino Acid Metabolism; Valine, leucine and isoleucine
degradation [PATH:sde00280]
Metabolism; Xenobiotics Biodegradation and Metabolism; Ethylbenzene
degradation
Metabolism; Xenobiotics Biodegradation and Metabolism; Benzoate
degradation via hydroxylation [PATH:sde00362]
Metabolism; Xenobiotics Biodegradation and Metabolism; Geraniol
degradation [PATH:sde00281]

SSDB

Motif Pfam: Thiolase_N Thiolase_C ketoacyl-synt
PROSITE: AA_TRNA_LIGASE_I THIOLASE_1 THIOLASE_2

Other DBs NCBI-GI: 90021253
NCBI-GeneID: 3965712
JGI: Sde1606
UniProt: Q21KB1

Position 2064003..2065178

AA seq 391 aa
MSLQPRDVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWG
CVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVG
GVEHMGHIDMNQHVDPNPALGHSVAQAAGSMGLTAEYLSLLHGITREAMDEFGARSHRKA
AEATEQGKFAREIIARIGHDETGAPTLIKHDETIRPDTTVEALSKLKPAFNPKGGTVTAG
TSSQITDGASSMLVMSAAKAAELGLTPIAKIRSMALAGVDPSIMGYGPVPATQKALANAG
LSIEDIDVVELNEAFAAQALPVLKDLNLLDAMEDKVNLYGGAIALGHPFGCSGTRITGTL
LSVMQDKDATLGVSTMCIGLGQGITTIVERV

NT seq 1176 nt +upstreamnt +downstreamnt
atgagcttgcaacctagagatgtggtgattgtcgattacgctcgcactcccatgggccgt
tctaaaaatggctgttacagaaatgttcgcgcagatgatttaagtgcagatcttattact
ggtttgctcgctcgcaatgcggcgctcgacccagctcaaattgacgatatgatttggggc
tgtgtaatgcagcgcggcgagcaagggtttaacgttgctcgcaatattttactgcgtgca
ggtttgccccacactgtaccggcgcaaaccgtaaaccgcctttgcggttcttctatgtct
gcattgcacacagcggctgccaatattatggctgggctgggcgatgtgtacttggtgggc
ggtgttgagcacatggggcatatcgatatgaaccagcatgtcgatcccaaccccgcactc
ggtcattcagtagcgcaagcagctggctctatggggttaacggcagagtatctttcgttg
ctgcacggtattacccgtgaagcgatggatgagtttggggcgcgatcacacagaaaagcg
gctgaagccactgagcagggtaagttcgccagagagattatcgcgcgcatcggccacgac
gaaaccggtgcccctacgttaatcaagcacgacgagacaattcggccagatactaccgtt
gaggctttatctaagctcaagcctgcttttaaccccaagggcggaacggttacggccggt
acgtcatcgcaaataactgatggcgcctcatccatgctggttatgtctgcggctaaggcg
gctgagttgggtttaacgcctatagctaaaattcgcagcatggcgctggcgggggttgat
ccttcaattatggggtacggcccagtgcctgccacgcaaaaggcactggcaaacgctggc
ttatctattgaggatatagatgtggtagagcttaacgaagcctttgctgcgcaggcgtta
cccgtacttaaagaccttaacttgctggatgctatggaagacaaggtgaacttatatggt
ggtgcaattgcgctggggcatccatttggttgctcgggtacccgtattaccggtacgctg
ctttcagttatgcaagataaagacgccacgctaggggtgtctactatgtgtataggttta
gggcagggtataaccaccattgttgagcgtgtttaa

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (2)   
   JGI-SDE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (3)   
   PROSITE (3)   
All databases (23)

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