KEGG   Shewanella denitrificans: Sden_0210Help
Entry
Sden_0210         CDS       T00344                                 

Definition
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase (EC:4.2.99.18 3.2.2.23)
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sdn  Shewanella denitrificans
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:sdn00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Sden_0210
Enzymes [BR:sdn01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Sden_0210
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Sden_0210
DNA repair and recombination proteins [BR:sdn03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Sden_0210
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
Position
complement(229919..230734)
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRQGIAPYLVDQTVVELIVRNASLRWPVPDLAHNIVGQTILSVRRRAKYLL
IDTEAGITIVHLGMSGSLRILPRNTPVEKHDHIDLVLANGRMLRFNDPRRFGAWLWYELP
EEAHPLLAKLGPEPLSEAFNPLQLLTALKGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPESEAGKIDIEKLTLLVVEVKQILAQAIKQGGTTLKDFTNADGKPGYFAQKLHVYGR
GSKSCTHCGNLLSEIRLGQRTTVFCGLCQTK
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgccagaactcccggaagttgaagtcactcgtcaaggtatagccccttaccttgttgat
caaaccgtcgtagagcttattgtccgcaacgcttctttgcgttggccggtgccagatctt
gctcacaatattgtcggccaaaccatactcagtgtcaggcgcagagccaaatacttgctg
atagataccgaggctgggataaccatagtgcacttaggcatgtccggcagtttgcgcatt
ctgccaagaaacaccccggttgagaagcacgatcatattgacttagtgttagccaatggc
cgcatgctgcgctttaatgaccctaggcgttttggtgcctggctttggtatgaactccct
gaagaagctcaccccttactggcaaagctcggccctgagccactaagcgaggcttttaat
ccactgcagttgctaacagccctaaaaggcaagaagaaagccattaaactttgcctgatg
gataaccatattgtagtgggcgtcggtaatatttatgccaatgaagccttgtttgcagct
ggcatacatcctgaatccgaagcgggaaaaatagatattgaaaagctgacgctactggtg
gttgaggtaaaacaaattctggctcaggccatcaagcaaggcggcaccaccttgaaggat
tttactaatgctgatggcaaacccggctactttgcccaaaaactgcatgtctacggtcga
ggaagtaaaagctgcactcattgtggcaacctgctcagtgaaattcgccttggccaacgc
accacagtcttttgcggcctgtgccaaacaaaatag

DBGET integrated database retrieval system