KEGG T00344: Sden

Shewanella denitrificans: Sden_0350

Entry

Sden_0350 CDS T00344

Gene name

murE

Definition

UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase

Orthology

K01928

UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13]

Organism

sdn Shewanella denitrificans

Pathway

sdn00300	Lysine biosynthesis
sdn00550	Peptidoglycan biosynthesis

Class

Metabolism; Amino acid metabolism; Lysine biosynthesis [PATH:sdn00300]
Metabolism; Glycan biosynthesis and metabolism; Peptidoglycan biosynthesis [PATH:sdn00550]

SSDB

Motif

Pfam:

Mur_ligase_M Mur_ligase_C Mur_ligase NIL

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

390106..391614

AA seq 502 aa
MMRLSDILAPWFHYAGVESASSMSLDSRKVTQGCLFIALPGHQVDGRAYIEQAKAQGAVA
ALVHTDDPDSHGKVENLGSGITPWPVVNFFQLSSQLSAVAAQFYPLTPQKMALIGITGTN
GKTSVSQLIAQLTSLLGGKAAVMGTLGNGLWGQLVDSGNTTADAVTVMAQLHDFDVKGAD
ICAMEVSSHGLVQGRVTAVPFDIAVFTNLTRDHLDYHGDMASYASAKKRLFQFPSLKYAL
LNLDDDTGAQWFEELAATKRKGFSVSPNAKACYYTDKLHFDDAGVQGDFYYHDFGENAVS
QHKARLVSPLLGAFNLSNLLAAIAALHLSGVAMADLLAVTPKLVPVAGRMERFSLPQGAS
LVVDYAHTPDAIEQALKALRIHCHGQLWCVFGCGGDRDKGKRPLMAQAAERFADKLMVTS
DNARSEDPSAIIGDVLKGLTQPENALMEVDRVSAVKRVATLAKAGDIVLLAGKGHETYQE
IAGQRLDYDERALALTLSQVTL

NT seq 1509 nt +upstreamnt +downstreamnt
atgatgcgtttatctgatattttagccccttggtttcattacgctggggttgaatcagcc
tccagcatgagcttagacagccgtaaagtgacgcaaggatgtttatttattgccttgccc
gggcatcaagtggatggccgtgcttatatcgaacaagcgaaagcccaaggcgcggtagcg
gccttggtgcatacggatgaccctgattcccatggaaaggtagaaaatctaggcagcggt
atcacgccttggcctgtggtgaatttctttcagttaagcagtcagcttagtgccgttgcg
gcgcagttttatccactaacgccacaaaaaatggcacttattggaatcactggcaccaat
ggcaagacctctgtaagccaattgatcgcacagctcactagtttattgggcggcaaagcc
gccgttatgggcactttaggcaatggcctgtggggccagttagttgatagtggcaacact
accgccgatgccgtcactgtcatggcacagttacatgactttgatgtcaagggcgcagat
atttgtgccatggaagtctcaagccatggcttagtgcaagggcgagtgacagctgtgcct
tttgatattgcagtgtttactaacttaacgcgcgatcatcttgattatcatggagatatg
gcctcttacgccagcgctaagaagcggctatttcaattcccaagcctcaaatatgcattg
ctaaaccttgatgatgacacaggtgcccagtggtttgaggaacttgccgccactaaacgt
aaaggctttagtgttagccccaatgccaaggcttgctattacacggataagcttcatttt
gatgatgccggtgtgcaaggggatttttattatcacgactttggcgaaaacgcagtctct
caacataaagcgcggctggtatcgccactattaggtgcatttaatctatctaatttatta
gccgctattgccgctttacaccttagtggagtggccatggcggatttactcgccgtcacc
ccaaaattagtgccagttgctggacgcatggagcgtttttccctgccacaaggtgccagc
ctagtggtggattatgcccacacgccagatgccatagagcaagccctaaaagcgctgcgt
attcattgccatgggcaattatggtgtgtatttggctgtggcggtgacagagataaaggc
aaacggcccttgatggcccaagctgccgagcggtttgccgacaagttaatggtcaccagc
gacaatgctcgcagtgaagatccaagcgccatcattggcgatgtgcttaagggcttaact
cagcctgaaaatgccttaatggaagtggacagagtcagcgcagttaaacgggttgccaca
cttgctaaggcaggagacatagtgcttttggcgggcaaggggcatgaaacctatcaagaa
attgctgggcagcgtttagattatgatgaacgcgccttggcactgacattatctcaggtg
acattatga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SDN (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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