KEGG T00344: Sden

Shewanella denitrificans: Sden_2183

Entry

Sden_2183 CDS T00344

Gene name

sucA

Definition

2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2)

Orthology

K00164

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Organism

sdn Shewanella denitrificans

Pathway

sdn00020	Citrate cycle (TCA cycle)
sdn00310	Lysine degradation
sdn00380	Tryptophan metabolism
sdn01100	Metabolic pathways
sdn01110	Biosynthesis of secondary metabolites
sdn01120	Microbial metabolism in diverse environments

Module

sdn_M00009	Citrate cycle (TCA cycle, Krebs cycle)
sdn_M00011	Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:sdn00020]
Metabolism; Amino acid metabolism; Lysine degradation [PATH:sdn00310]
Metabolism; Amino acid metabolism; Tryptophan metabolism [PATH:sdn00380]

SSDB

Motif

Pfam:

Transket_pyr E1_dh

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2588172..2590994)

AA seq 940 aa
MHQGIMKAWLESSHLSGANSTYVEEMYEAYQVDPDSVAADWRVVFDNLPPVNGASAEVPE
AAHSKVRDYFRSVALAGRLKGAGSVSDPELDSKQVKVLQLINAHRFRGHQNANLDPLGLW
KREAVSELDPKFHDFNDEDMQREFNTGSFALGGQTMKLSDIVKALKSTYCGSIGAEYMHI
TDTDEKRWIQQRLEPTLGKANYDKDTKRRILEGLNAAEGMEKYLGAKFPGAKRFSLEGGD
ALVPMMREIIYRAGSAGTKEIVVGMAHRGRLNLLVNVLGKRPAELFDEFAGKHTDRDGSG
DVKYHQGFSSEFVTPGGNVHLALAFNPSHLEIVNPVVIGSVRARQDRLNCKNGLRVMPIT
IHGDSAITGQGIVQETFNMSQTRGFKVGGSIRIVVNNQVGFTTSNAADVRSTEYCTDIAK
MVQAPIFHVNADDPEAVAFIAQLAVDYRNEFKRDVVIDLVCYRRHGHNEADEPSATQPLM
YAKIKKHPTPRKIYADKLIAENSIAEEDVTGLINHYRDALDHGDCVVKEWRPMSERPVDW
SPYIGKDWDAPYDPTMPIARLQNLANKLVSVPESHKLQSRVAKICGDREAMAKGDKPLDW
GFAETLAYASILEDKRRVRITGQDSGRGTFFHRHAVLHNQNDGSTYMPLRNIADEQGPID
ITDSVLSEASVLAFEYGYATAEPGGLTIWEAQFGDFVNCAQVVIDQFLSSGEQKWGRLCG
LTMLLPHGYEGQGPEHSSARLERFLQLCANHNMQVCVPSTPAQVYHMLRRQVVRPMRRPL
VVMSPKSLLRHPLAVSSLEELAEGSFQNIIGEIDSLDSSKVDRVVFCSGKVYFELLEKRR
KENLTNIAILRVEQLYPFPHEEMVAALNEYQHVTDFVWCQEEPQNQGAWYSSQHHFWSAI
PGTAKLTYAGREASAAPACGYPSLHAEQQESLVNSALKLS

NT seq 2823 nt +upstreamnt +downstreamnt
atgcaccaaggcatcatgaaagcctggctcgaatcatcacatctaagtggtgctaactcg
acctacgtagaagagatgtacgaagcctatcaagtagaccctgattcagttgctgctgat
tggcgcgtcgtttttgataatctccctccggtaaatggtgcctctgcagaagtgccagaa
gctgcccattcaaaagtacgtgactattttcgaagtgtcgctttagcgggtcgattaaaa
ggcgcgggaagcgtcagcgatccagaattagattcgaagcaagttaaagtactgcaattg
atcaatgcccaccgtttccgtggtcatcaaaacgctaacttagacccattgggtttgtgg
aagcgtgaagccgtgtctgaattagatcctaagttccatgattttaatgatgaagacatg
caaagagaattcaatacaggttcgttcgccttaggcggtcaaaccatgaaattgtctgac
atcgttaaggcgcttaaaagcacttactgtggttcgattggtgctgaatacatgcacatt
accgacacagatgagaaacgttggatccagcaacgtcttgagccaaccttaggtaaggct
aactacgataaagacactaagagacgcattctcgaagggttgaacgcggcagaaggtatg
gaaaaatacctaggcgctaagttccccggtgctaagcgtttctcccttgaaggcggcgat
gcactcgtgcctatgatgcgtgaaattatttatcgcgcaggctctgctggcactaaagaa
atcgttgtgggcatggctcaccgtggtcgcttaaacctattagttaacgtactgggtaag
cgtccggctgaacttttcgatgagttcgccggtaaacacacagacagagacggttcaggt
gacgttaagtatcaccaaggtttctcgtctgaatttgtgactccaggtggcaacgttcac
ttagcgcttgctttcaacccgtcgcatttagaaattgttaaccctgtggttatcggcagt
gtgcgtgctcgtcaagacaggcttaattgcaaaaatggcctgcgggtaatgcctatcact
attcatggtgacagcgctattacaggtcagggcatagtgcaagagacattcaacatgtct
caaacccgcggctttaaagtgggcggtagcatacgcatagtggtgaacaaccaagtgggc
ttcactacttcaaatgcagccgatgtgcgctcaacggaatactgtaccgatatcgctaag
atggtgcaggcgccaattttccacgtcaatgctgacgatcctgaagcggttgcctttatc
gcccagttggcggttgattatcgcaatgagtttaagcgtgatgtggtgattgatttagtc
tgttaccgccgtcatggtcacaacgaagccgatgagcctagtgcgactcagcctttgatg
tacgcaaaaattaagaagcacccaacgccgcgtaagatttacgccgacaagttgattgct
gaaaatagcattgccgaagaagatgtcacaggtttaatcaaccattaccgtgatgcgctg
gatcacggcgactgcgtggtgaaagagtggcgtccgatgtctgagcgtccggtggattgg
agcccctacataggtaaagattgggatgcaccctatgacccgactatgcctattgcgcgg
ttacagaacttagccaacaagttagtctcagtgcctgaaagtcacaaacttcagtctcgt
gtggcgaaaatttgtggtgatagagaagccatggcgaagggcgacaagccactggattgg
ggttttgccgagaccttagcctatgccagtatcctagaagacaagcgccgggtgcgcatc
acaggtcaagattctggccgtggtaccttcttccatcgccatgcggtattgcataatcaa
aatgatggcagtacctatatgccactgcgcaatattgccgatgaacaaggcccgattgat
atcacagactctgtgttatcagaagcctcagtgctggcgttcgaatacggttatgccacc
gcagagccgggtggtttaacgatttgggaagcgcaatttggtgatttcgtcaactgcgcc
caagtggttattgaccagttcttatcctcgggtgagcaaaagtggggccgtttatgtggc
ctgactatgttattaccccatggttatgaaggccaaggtccagagcactcgagcgcccgt
ttagagcgtttcctccagctttgtgctaaccacaatatgcaagtgtgcgtgccttcaacc
ccagcacaggtttaccatatgctgcgtcgtcaagtggtgcgtcctatgcgtcgtccactg
gtggttatgtcgcctaagtcgctactgcgtcatccgttagccgtgtctagcctggaagaa
ttagccgaaggtagtttccaaaatatcattggtgaaattgatagcttagacagcagcaag
gttgaccgcgtggtgttctgtagcggtaaagtgtatttcgaattgctggaaaaacgccgt
aaagaaaacctgaccaatattgccatattacgtgttgagcagttatatccattccctcac
gaggaaatggttgctgccctgaacgaatatcagcatgtgaccgattttgtctggtgtcag
gaagagccgcaaaaccaaggcgcttggtacagcagtcagcatcacttctggagtgctatt
ccagggacggctaagttgacttatgccggtcgtgaagcgtctgcggcgccagcttgtggt
tacccaagcctgcatgcagagcaacaagaatcattagtgaatagtgcgttaaaactgtcg
taa

All links

Pathway (8)   
   KEGG PATHWAY (6)   
   KEGG MODULE (2)   
Chemical substance (13)   
   KEGG COMPOUND (13)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SDN (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (36)   

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