KEGG T02008: SPSE

Staphylococcus pseudintermedius ED99: SPSE_0006

Entry

SPSE_0006         CDS       T02008

Symbol

gyrB

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

sdt Staphylococcus pseudintermedius ED99

Brite

KEGG Orthology (KO) [BR:sdt00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdt03032]
    SPSE_0006 (gyrB)
   03400 DNA repair and recombination proteins [BR:sdt03400]
    SPSE_0006 (gyrB)
Enzymes [BR:sdt01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     SPSE_0006 (gyrB)
DNA replication proteins [BR:sdt03032]
Prokaryotic type
  DNA Topoisomerases
   SPSE_0006 (gyrB)
DNA repair and recombination proteins [BR:sdt03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SPSE_0006 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c TOPRIM_C HATPase_c_3

Other DBs

NCBI-ProteinID:

ADX75359

Position

5356..7278

AA seq 640 aa
MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA
DNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH
GVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQVGDTDQTGTVIRFKADGTIF
QETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENVREDSYHYEGGIKSYVELINENK
EPLHDEPVYVHQTRDDIEVEIALQYNSGFATNLLTYANNIHTYEGGTHEDGFKRALTRVL
NNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQIVDRVF
SELFERFLYEHPQVARIIVEKGIMASRARIAAKKAREVTRRKSALDISSLPGKLADCSSK
DPSESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDKILNNNEIRQMVTA
FGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPL
YKLTQGKQKYYVFNDRELDKLKEKLNPTPKWSIARYKGLGEMNADQLWETTMNPENRAML
QVTLDDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDF

NT seq 1923 nt +upstreamnt +downstreamnt
ttggctgatgtgaacaactcagaaaactatggcgcaagtcagattcaagtattggaaggt
cttgaagcggtacgtaagcgaccaggtatgtatattggttcaacttcagaacgcggtctg
catcatctcgtttgggaaattgtcgataacagtattgacgaagcacttgcaggatatgct
gataacatagaagtagtcattgagaaggataattggattaaagttacggataatggacgt
gggattcctgttgatattcaagaaaaaatgggacgtcctgcagttgaagttattttaaca
gtattacacgctggtggtaagttcggcggcggtggatacaaagtttcaggtggtttacat
ggtgtgggctcatcagtagtaaacgccttaagtgaaacattagaggtttatgtgcacaga
gatggtcgtattcatcatcaagcgtaccataaaggtgtccctgcttttgatttaaaacaa
gtaggcgatacagatcaaacaggaacagtcatccgtttcaaagcggacggtacgattttc
caagagacaacagtttataactatgaaacattacaaaaacgtattcgtgaattggcattt
ttaaataaaggcatccgtattacgctcacagacgaacgtgacgaagaaaatgtgcgtgag
gatagttatcactatgaaggtggaattaagtcgtatgtggagcttataaacgaaaataaa
gagcctttacatgatgagccggtttatgttcatcaaacacgtgacgatattgaagtggaa
atcgcactacaatacaacagtggttttgcaacaaatctactgacatatgcgaataacatt
cacacgtatgaaggtgggacgcacgaagacggctttaaacgtgcattgacaagagtgttg
aacaattatggtacacaaagcaagttgattaaagaagataaggatcgtttatcaggtgaa
gatacacgcgaaggcttaacagcagtcgtgtcgattaaacatggtgatccacaattcgaa
ggtcaaacgaaaacaaaattaggtaactctgaagtccgtcaaattgttgaccgtgtcttc
tcagagctttttgagcgctttttatatgaacatccacaggtggcacgcatcattgtagaa
aaagggattatggcatcacgcgcacgtattgctgctaaaaaagcacgtgaagtcacgcgc
cgtaaatctgctttggacatttcaagtttgccaggtaaattagctgactgttcgagtaaa
gatccgtctgaaagtgagattttcttagtagagggtgactctgccggggggtctacaaaa
tcaggtcgtgactcacgtacacaagcgattttaccgttgcgtggtaaaattttaaacgtt
gaaaaagcacgcttagataaaattttaaacaacaatgaaattcgtcaaatggtaacggca
tttggtactggcattggcggcgaattcgatatttcgaaagcacgctaccataagattgtc
attatgaccgatgcggatgtcgatggtgcgcatattcgtacgttgttactcacgttcttc
tatcgctttatgcgtccgttgattgaagcgggttacgtgtatattgcacaaccaccgttg
tataaactgacgcaaggtaagcaaaagtattatgtgtttaatgaccgtgagctcgataaa
ttaaaagaaaaactgaatcctacgccaaaatggtctattgcacgctataaaggtttaggt
gagatgaatgcggatcagttatgggagacaacaatgaatccagaaaaccgtgcgatgttg
caagtgacattggatgatgcgattgaagcagaccaaacttttgaaatgttgatgggcgat
gtcgttgaaaatcgtcgtcagttcattgaagataacgccgtatatgcgaacctggatttc
tag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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