KEGG   Shigella dysenteriae Sd197: SDY_2204
Entry
SDY_2204          CDS       T00306                                 
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6 dehydratase
  KO
K01710  dTDP-glucose 4,6-dehydratase [EC:4.2.1.46]
Organism
sdy  Shigella dysenteriae Sd197
Pathway
sdy00521  Streptomycin biosynthesis
sdy00523  Polyketide sugar unit biosynthesis
sdy00525  Acarbose and validamycin biosynthesis
sdy00541  O-Antigen nucleotide sugar biosynthesis
sdy01100  Metabolic pathways
sdy01110  Biosynthesis of secondary metabolites
sdy01250  Biosynthesis of nucleotide sugars
Module
sdy_M00793  dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:sdy00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00541 O-Antigen nucleotide sugar biosynthesis
    SDY_2204 (rfbB)
  09109 Metabolism of terpenoids and polyketides
   00523 Polyketide sugar unit biosynthesis
    SDY_2204 (rfbB)
   01055 Biosynthesis of vancomycin group antibiotics
    SDY_2204 (rfbB)
  09110 Biosynthesis of other secondary metabolites
   00521 Streptomycin biosynthesis
    SDY_2204 (rfbB)
   00525 Acarbose and validamycin biosynthesis
    SDY_2204 (rfbB)
Enzymes [BR:sdy01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.1  Hydro-lyases
    4.2.1.46  dTDP-glucose 4,6-dehydratase
     SDY_2204 (rfbB)
SSDB
Motif
Pfam: GDP_Man_Dehyd Epimerase Polysacc_synt_2 3Beta_HSD RmlD_sub_bind NAD_binding_4 adh_short KR Sacchrp_dh_NADP Gp_dh_N
Other DBs
NCBI-ProteinID: ABB62289
ShiBASE_China: SDY2204
UniProt: Q32EG6
Position
2006782..2007867
AA seq 361 aa
MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSKRYVFEHADIC
DAAAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDG
DKKNSFRFHHISTDEVYGDLPHPDEVNNKEQLPLFTETTAYAPSSPYSASKASSDHLVRA
WKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHA
RALYIVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGH
DRRYAIDAEKISRELGWKPQETFESGIRKTVGWYLSNTKWVDNVKSGAYQSWIEQNYEGR
Q
NT seq 1086 nt   +upstreamnt  +downstreamnt
gtgaagatacttgttactggtggcgcaggatttattggttctgctgtagttcgtcacatt
ataaataatacgcaggatagtgttgttaatgtcgataaattaacgtacgccggaaacctg
gagtcacttgctgatgtttctgactctaaacgctatgtttttgaacatgcggatatttgc
gatgctgctgcaatggcgcggatttttgctcagcatcagccggatgcagtgatgcacctg
gctgctgaaagccatgtggatcgttcaattacaggccctgcggcatttattgaaaccaat
attgttggtacttatgtccttttggaagcggctcgcaattactggtctgctcttgatggc
gacaagaaaaatagcttccgttttcatcatatttctactgacgaagtctatggtgatttg
cctcatcctgacgaagtaaataataaagaacaattacccctctttactgagacgacagct
tacgcgcctagtagtccttattccgcatcaaaagcatccagcgatcatttagtccgtgcg
tggaaacgtacctatggtttaccgaccattgtgactaactgttcgaataactacggtcct
tatcactttccggaaaaattgattccactagtaattcttaatgctctggaaggtaaggca
ttacctatttatggcaaaggggatcaaattcgtgactggctgtatgttgaagatcatgcg
cgtgcgttatatatcgtcgtaaccgaaggtaaagcgggtgaaacttataacattggtgga
cacaacgaaaagaaaaacatcgatgtagtgctcactatttgtgatttgttggatgagatt
gtaccgaaagagaaatcttaccgcgagcaaattacttatgttgccgatcgcccgggacac
gatcgccgttatgcgattgatgcagagaagattagccgcgaattgggctggaaaccgcag
gaaacgtttgagagcgggattcgtaaaacggtgggatggtacctctccaatacaaaatgg
gttgataatgtaaaaagtggtgcctatcaatcgtggattgaacagaactatgagggccgc
cagtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (8)   
   KEGG PATHWAY (7)   
   KEGG MODULE (1)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   SHIBASE_CHINA (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (31)   

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