KEGG   Selenomonas sp. oral taxon 478: ADJ74_03305
Entry
ADJ74_03305       CDS       T04017                                 
Name
(GenBank) hypothetical protein
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sele  Selenomonas sp. oral taxon 478
Pathway
sele03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sele00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ADJ74_03305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sele03019]
    ADJ74_03305
   03400 DNA repair and recombination proteins [BR:sele03400]
    ADJ74_03305
Enzymes [BR:sele01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ADJ74_03305
Messenger RNA biogenesis [BR:sele03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ADJ74_03305
DNA repair and recombination proteins [BR:sele03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ADJ74_03305
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 T2SSE
Other DBs
NCBI-ProteinID: AKT53555
UniProt: A0A0K1FFV0
Position
1:complement(690087..693743)
AA seq 1218 aa
MQFFLCRLNILKCNKIKQNFEYLAVLEFPRKVLFLPHMIRGVHAHYPSAEEFLSESDELT
RSFFTLTQSVWIYYEELIVMRQTLHKFSVPDHIVVVYNDVFDNSYPLPLGERDYSALQDD
KIDQEELPLFHLYVDCPGDTRESLCSFIHCHSTSDMGREDVKEVGFYGMVDTKNALEPSN
VPDDAVRITRMELPHYAERLQRGELENRTYRVVGMTDGQLKCIRAMNTLGGVYHVCFVGE
AEGERSQEADRYLPTFQKYWGAGSTFRSIKFYKDPLDPENYTETEDVSQGIIVSDILDQC
EKAQIGRAYSDIIVTAPTGAGKSVLFQVPAIYLSEQSEPYVTIVISPLVVLMADQVRELE
EKGIYYATFINSNITYEERQKRLSGIKDGTYSIVYLSLELLLAHSIQDLFGERHIGLMIV
DEAHLVTSWGRDFRVDYWFLGSYITGVRQNQWQHSAQMQFPVVCLTATAVYGGDNDVIDD
LQESLNLNCEQRHMYLGYVVRDNIDFSIRRLTKDTDSEAKADIVAKRIADFVSRGEKTIV
YFPYTRQIDEVYQKLTVRHEFASKRTTRYYGGMESKEKQAAYESFLCGESIVMLATKAFG
MGVNIPDILNVYHYAPTGTLADYVQEIGRAARKLPQGHASIDFAVGDMKSVRRLWGMSSL
RQYQLKSMMKKLYTLYAQSRNASGKRTRNLLIAADEFDFLFDSKDIDNAVKTGLMLLSTD
LYRKYRFKVITMRPRVMLTMQYISIPPEVEEDFLRQYGNYCERVNDVYPRNEGLHRNNPI
AVSRTGGIYEVELNRLWEQGFDTMTFAQFKYKFFNGELFGDVFHDVVFCPHLRLVIHYTN
GYEKAQESMAMIAKCLQDSFSELKREYGARMFSFQEFKTVFNRYYGRRQPDEYIRLLLEL
FVGETESGSAWDPPKGDWKFLIKRKKDTSGKSQTGNEVGYMISGGKATSIGRKLEGYLQT
ARPNINGQDFVVYIPILSTGQEKPRMRKPNNNQFLASVLQIFDLASYEVEGGRNPQIFVR
INDPGKLLQLSMPETKYRNTILEDINQRHENAIRIMNGFMTKSLTTERRWAIIEQYFLGK
DEWVCDALISPAGTAVASVGSAVEKPHTDTNTPIKVSIIGGNTPADMGVTGWRELGKLLT
LDLSNYEKQGIPLPTKVNFQVEVGVHSYGGLFLWEQSRTMVFPERISNEDTKSLGQDHWC
VQLLREENLRAMTRNLKG
NT seq 3657 nt   +upstreamnt  +downstreamnt
atgcaatttttcttgtgtagacttaatatattaaaatgtaataaaataaaacagaacttt
gagtatttggctgtgttggagttcccaagaaaagttctattcctcccccatatgatcaga
ggtgtacacgcgcattacccaagtgctgaagaatttttgagtgagtctgatgaactgact
cgttcattctttactttgacgcaaagtgtttggatctactatgaggaactcatagttatg
cgacaaacgctgcataaatttagtgtgccggatcatatcgttgtcgtctacaatgatgtt
tttgacaattcatatccgcttcccttgggggaaagggattattccgctttgcaggatgac
aaaatcgaccaagaagaactccctttatttcatctttatgtcgactgccctggagacacg
agagaatcgttgtgcagcttcattcattgccattctacgtcagatatggggcgtgaggat
gtcaaagaagttggattttatgggatggtggatacaaaaaatgctttagagccgagcaat
gtgcccgatgatgccgttcgtattacacgaatggagttgccacattatgctgagcggctg
cagagaggagagttagagaatcggacgtatcgggttgttggtatgacagatggccagttg
aagtgcattcgggcaatgaatacgctagggggcgtttatcatgtctgctttgtgggagaa
gcagaaggtgagcgcagccaagaggcggatcgttatctaccgacgtttcaaaagtactgg
ggagcagggagcacatttagatcgataaaattttataaagatccattagatccggagaat
tatacagagactgaggatgtatcgcagggaattatcgtttctgatatattggatcagtgc
gagaaagcacaaattggaagggcatattcggatattattgtgaccgcaccaacgggggca
gggaagtctgttctctttcaggttccggcaatttatctttcggagcagagtgaaccctat
gtgaccattgtgatttcaccccttgtcgtactgatggcagatcaggtgcgtgagttggaa
gaaaaagggatttattatgcaacctttatcaattccaacattacctacgaggagcgtcag
aaacgtctgagtggcatcaaggatggtacatattcgattgtctatttatccctcgaactt
ctccttgcacatagtattcaggatttatttggcgaacggcacattggccttatgatcgtg
gatgaggcacatttagttacctcgtgggggagagactttcgtgtggattattggttcctc
ggcagttatattaccggggttcgccagaatcaatggcagcatagtgcgcagatgcaattc
cccgttgtttgcctgacggcgactgctgtatacggcggagataatgatgttatcgacgac
cttcaggaaagccttaacttgaactgcgagcagaggcacatgtatctaggctatgttgta
cgcgacaatatcgatttttcgatacgccgcttgaccaaggacacagacagcgaagctaaa
gccgatattgtcgcaaaacgaattgcagactttgtgtcacgcggcgaaaaaactattgtc
tatttcccgtatactagacagatcgatgaagtttatcagaaattgactgtacgacatgag
tttgcgtcgaagcgtaccaccagatactatggtggtatggagagcaaggaaaagcaagca
gcatacgaatcgttcctttgtggagaatccattgtcatgcttgctacgaaggcgtttggg
atgggtgtcaatatacctgatattcttaacgtttatcactatgcaccgactggcactttg
gcggattatgttcaggaaattggccgtgcagcgcgcaaacttccccaggggcatgcgagc
attgattttgctgttggggatatgaaaagtgttcgtagactctgggggatgtcaagcctt
cgacagtaccagttgaagtccatgatgaagaagctctatacgctttacgcacagtcgagg
aatgcatcgggaaagagaacacgaaacctgctcatcgcagcggatgaattcgattttcta
tttgacagcaaagatatagacaatgcggttaaaacagggcttatgttgcttagtacagac
ctgtatagaaagtatcgctttaaggttattactatgcgtccgcgggtgatgctcacaatg
cagtacatctctattccgccggaggtagaggaagattttctgcgtcaatatggaaactat
tgcgaaagggtaaacgatgtttatccgaggaacgaggggcttcatagaaataatcccatt
gctgtatcacggacaggaggtatttatgaagtcgagttaaaccgactgtgggaacagggg
tttgacacaatgacgtttgctcagttcaaatataaattttttaatggcgaactatttggt
gatgtatttcacgatgtcgtgttttgcccgcatctccgtctagtcattcattataccaat
ggctatgagaaggcacaggagagtatggcgatgatcgcaaagtgcttgcaagatagtttt
agcgaattaaaacgagagtacggagcgcgaatgttctccttccaggaatttaagaccgtg
tttaatcggtattatggacgtaggcagccggatgagtatatacggctgctattggaatta
ttcgttggtgagacggaatcaggttctgcatgggatccgcccaaaggtgattggaagttt
cttatcaagcgaaaaaaagacacatctggaaaaagccaaacagggaatgaagtaggctat
atgatatcaggtgggaaggcaacttctatcgggagaaagttggagggatatctgcagact
gcgcggcctaatattaacgggcaggactttgtggtatatattccgattctgtccacgggg
caggaaaagccgcgtatgcgtaagccgaataataaccagttcttggcctctgtccttcaa
atctttgatcttgccagctatgaagttgagggaggcagaaatccgcagatttttgtgcgc
ataaatgatccagggaaactactgcagctctctatgccggagacgaaatatcgtaatact
attttggaggatatcaatcagcgtcacgagaatgccattaggattatgaatggatttatg
accaagtcactcacaacagagcgtcgatgggcgattattgagcaatattttttgggaaaa
gatgaatgggtttgcgatgcattgatatcgcctgcgggaacggcggtggcatctgtagga
tctgccgtcgaaaagccacacacggatacgaatacacccatcaaggtcagcattatagga
ggaaatacacccgctgatatgggcgttacaggctggcgtgaactgggaaagttactcacg
ctcgatctttcgaattatgagaaacagggaatcccactaccgacgaaagtcaattttcag
gtcgaagtgggcgtgcacagctatggtggactattcttgtgggagcagtcacgcacaatg
gtttttccggaacggatttccaatgaagacaccaagagcctcgggcaggatcattggtgt
gtccagcttctgcgagaagagaatcttcgggcgatgaccagaaatctgaaaggttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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