KEGG   Saccharopolyspora erythraea: SACE_6295
Entry
SACE_6295         CDS       T00492                                 
Symbol
rho1
Name
(GenBank) putative transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sen  Saccharopolyspora erythraea
Pathway
sen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SACE_6295 (rho1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sen03021]
    SACE_6295 (rho1)
   03019 Messenger RNA biogenesis [BR:sen03019]
    SACE_6295 (rho1)
Transcription machinery [BR:sen03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SACE_6295 (rho1)
Messenger RNA biogenesis [BR:sen03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SACE_6295 (rho1)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N SAP Spore_III_AA NACHT AAA_25 AAA_22 Ribos_L4_asso_C FANC_SAP
Other DBs
NCBI-ProteinID: CAM05467
Kitasato: SACE_6295
Cambridge: SACE_6295
UniProt: A4FN42
Position
complement(7044789..7046717)
AA seq 642 aa
MSSEAANGVAQAGRQESEQSGTGSETNGTPRRRGGLSGMVLAELRQLAGELGIETTGLRK
GDLIAAIKERQGGAAPQRSRSTKKPSQGAEDSAQAKAHQPALDESDADSKQRDTEQAAEP
APNGAAPSRGRGRRQQAADASGDDESRRSNNRRRRSSGRAGGAQEDERGGQGGQERSERG
ERQDRGDRQDRGDRQDRGDRQDRGDRQDRGERQDRNNARQQQDNRQDDGDEDGGRRRGRR
FRDRRRNRGRAEGGGGEPEVREDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSL
VRKYGLRRGDAIKGVIRQPREGEQQRQKFNPLVRVDAINGLEPDAAKGRSEFHKLTPLYP
NERLRLETEPHNLTGRIIDLVMPVGKGQRALIVSPPKAGKTMVLQAIANAITTNNPECHL
MVVLADERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELSIERAKRLVEMGHDVVVLL
DSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATALVETG
STMDTVIFEEFKGTGNAELKLDRKLADKRLFPAVDVDASSTRKDEILLSPDELAVTHKLR
RVLAALDAQQALELLQDRLRKSRTNIEFLMQVAKTTPGKDED
NT seq 1929 nt   +upstreamnt  +downstreamnt
ttgagcagcgaagcggccaacggcgtcgctcaagctggccggcaggaatccgagcagtcg
ggcaccggttccgagaccaacgggaccccgcgccgacgcggcggactttccggcatggtt
ctcgctgagctgcgccaactcgcgggggaactcggcatcgagaccaccggcctgcgcaag
ggcgacctgatcgcggccatcaaggagcggcagggcggcgcggccccgcagcggtcgcgc
agcaccaagaagccaagccagggcgccgaggacagcgcccaggccaaggcccaccagccc
gcgctggacgagagcgacgccgacagcaagcagcgcgacaccgagcaggccgccgagccc
gcccccaacggtgccgcgccgtcccggggacgtgggcgccgccagcaggccgccgacgcc
tcgggcgacgacgagagccggcgttccaacaaccgccgcaggcgctcctccgggcgggcc
ggcggtgcgcaggaggacgagcgcggtggccagggcggccaggagcgctccgagcgcggt
gagcgccaggaccgcggagaccggcaggaccgcggagaccggcaggaccgcggagaccgg
caggaccgcggagaccgccaggaccgcggtgagcgccaggaccgcaacaacgcccgtcag
cagcaggacaaccggcaggacgacggcgacgaggacggcggacgcaggcgcggacgccgg
ttccgcgaccgccgccgcaaccgcgggcgcgcggagggcggcggtggcgagccggaggtc
cgcgaggacgacgtgctgctgccggtcgcgggcatcctcgacgtgctggagaactacgca
ttcgtgcggacctccggctacctggcggggccgaacgacgtctacgtctcgctgtcgctg
gtccgcaagtacgggctgcggcgcggcgacgccatcaagggcgtcatccgccagccccgc
gagggcgagcagcagcggcagaagttcaacccgctggtgcgcgtcgacgccatcaacggc
ctggagcccgacgcggccaagggccggtcggagttccacaagctgaccccgctctatccg
aacgagcggctgcgcctggagaccgaaccgcacaacctgaccggccggatcatcgacctg
gtgatgcccgtcggcaaggggcagcgggcgctgatcgtctcgccgccgaaggcgggcaag
acgatggtgctgcaggcgatcgccaacgcgatcaccaccaacaaccccgagtgccacctg
atggtcgtcctcgccgacgagcgtccggaagaggtcaccgacatgcagcggtcggtgaag
ggcgaggtcatcgcctccaccttcgaccgtccgccgtcggaccacacgaccgtggccgag
ctgtcgatcgagcgggccaagcgcctggtcgagatgggccacgacgtggtcgtgctgctc
gactccatcacccggctgggccgcgcctacaacctggcggccccggcatcgggccggatc
ctctccggtggtgtcgactcgaccgcgctgtacccgcctaagcggttcctgggtgcggcg
cgcaacatcgagaacggcggctcgctgacgatcttcgccacggcgctggtggagaccggc
tcgaccatggacaccgtgatcttcgaggagttcaagggcaccggcaacgccgagctcaag
ctggaccgcaagctggccgacaagcggctgttccccgcggtcgacgtggacgcctccagc
acccggaaggacgagatcctgctctcgcccgacgagctggcggtcacccacaagctgcgc
cgggtgctggccgcgctcgacgcccagcaggccctggagctgctccaggaccggctgcgc
aagtcgcggaccaacatcgagttcctgatgcaggtcgccaagaccacgccgggcaaggac
gaggactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   CAMBRIDGE (1)   
   KITASATO (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (60)   

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