KEGG   Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1: SN31241_12260
Entry
SN31241_12260     CDS       T02779                                 
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
senn  Salmonella enterica subsp. enterica serovar Newport USMARC-S3124.1
Pathway
senn03030  DNA replication
senn03430  Mismatch repair
senn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:senn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SN31241_12260
   03430 Mismatch repair
    SN31241_12260
   03440 Homologous recombination
    SN31241_12260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:senn03032]
    SN31241_12260
   03400 DNA repair and recombination proteins [BR:senn03400]
    SN31241_12260
Enzymes [BR:senn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SN31241_12260
DNA replication proteins [BR:senn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SN31241_12260
DNA repair and recombination proteins [BR:senn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SN31241_12260
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP DNA_pol_IIIA_C HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AGS28200
Position
1258389..1261823
AA seq 1144 aa
MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL
LGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELKEGLILLSGGRM
GDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPV
VATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEA
LENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKAKEGLEERLAFLFPDEEERKK
RRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKI
TDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTM
AAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVKALID
MARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDF
LGLRTLTIINWALEMINKRREKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGM
KDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPV
LEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGI
DGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEK
VVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG
GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAKAE
AIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKEIERY
VGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALD
KYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQ
LLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLIGSEQVE
LEFD
NT seq 3435 nt   +upstreamnt  +downstreamnt
atgatcgatgggctggcgaagaccgggccgctggtgaaaaaggcggcctcattaggtatg
cctgcgctggcgatcaccgattttaccaacctctgcggtctggtgaagttctacggagcg
ggtcatggcgcgggcattaaacccatcgtcggggcggactttaatgttcacaacgaactg
ctgggagatgagctgactcatctgacggtactggcggcgaataatacgggataccagaac
ctgacgttgctgatctcgaaagcgtatcagcgcggctacggcgcggcaggcccgattatc
gagcgcgactggctggtagagcttaaagaaggtttgatcctgctttccggcgggcgcatg
ggcgacgtaggccgctgtctgctacgcggcaaccaggcgctggtggaggagtgcgttgct
ttctatgaagcgcattttcccgatcgctactttctggaactgatccgcaccggcagacag
gatgaagagacttatctccatgctgcggttgaactggctgaggcacgtggtttgccggtt
gtcgcgacaaacgatgtccgtttccttgaaagcgatgattttgacgcccatgagattcgt
gtcgcgatccacgacggtttcacgctcgacgatcctaaacgtccacgcaattattcaccg
cagcagtatatgcgcagtgaagaagaaatgtgcgagctgttctccgatattccggaggcg
ctggaaaatacggtggagattgccaaacgctgcaacgtaacggtgcgtctgggtgaatat
ttcctgccgcagttcccgaccggcgatatgaccaccgaagattatctggtcaaaaaagcg
aaagaggggctggaagagcgtctggctttcctgtttccggacgaagaagagcgcaaaaag
cgtcgcccggaatatgacgagcgtctggatattgaactacaggttatcaaccagatgggg
ttccctggctacttcctcatcgtgatggagtttatccagtggtcaaaagataacggcgtg
ccggtagggccgggacgtggttccggggctggttcgctggtggcctacgcgctgaaaatt
accgaccttgatccgctggaatttgacctgctgttcgaacgtttcctgaacccggaacgt
gtctcgatgcctgacttcgacgttgacttctgtatggagaaacgcgaccaggtgattgag
cacgtcgcagacatgtacgggcgcgatgcggtatcgcagattatcaccttcggtacgatg
gcggcgaaagccgttatccgcgatgtgggccgcgtgctggggcatccgtacggttttgtc
gatcgtatctcgaagctggtgccgcccgatccgggaatgacgctggcaaaagcctttgaa
gcagaaccgcaactgccggaaatttacgaggcggacgaagaggtcaaagcgctgatcgat
atggcgcgtaagctcgaaggcgtcacgcgtaacgccggtaagcacgctggcggcgtggtc
atcgcgccgaccaaaattaccgactttgcgccgctgtactgcgatgaagagggcaagcat
ccggttacccagtttgataaaagcgacgtggaatatgccgggctggtgaagttcgacttc
ctcggtttgcgtacgctgactatcatcaactgggcgctggagatgatcaacaagcggcgc
gagaaaaacggcgagccgccgctggatatcgccgccattccgctggatgacaagaaaagc
ttcgacatgctgcaacgctcggaaaccacggcggtcttccagcttgaatcgcgcggtatg
aaagacctgatcaaacgtctgcagccggactgctttgaagatatgatcgcgctggtggcc
ctgttccgtcccggcccgttgcagtcagggatggtagataacttcatcgaccgtaagcac
ggtcgtgaagaactctcttacccggacgttcagtggcagcatgaaagcctgaagccggta
ctggagccgacctacggcatcattctgtatcaggaacaggtgatgcagattgcccaggta
ctttccgggtatactctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaag
ccggaggagatggccaaacagcgttccgtttttgaagagggcgcgaaaaagaacggtatc
gacggcgaactggcgatgaaaatctttgacctggtggagaaattcgccggttacgggttt
aacaaatcgcactccgccgcttatgcgctggtttcttaccagacgctatggctaaaggcg
cactatccggctgaatttatggcggcggtaatgaccgccgatatggataacaccgagaag
gtcgtcggcctggtggacgagtgctggcggatgggactgaaaattctgccgccggatatt
aactccggattgtaccatttccacgttaacgatgagggcgagatcgtctacggcatcggc
gcgatcaaaggcgtcggcgaagggccgatcgaagcgatcatcgacgcgcgtaatcagggc
ggctatttccgcgagctgtttgatctgtgcgcgcggaccgacaccaaaaagctcaaccgc
cgggtgctggaaaagctgatcatgtccggggcgttcgaccgcctggggccgcaccgcgcc
gcgctgatgaactcattgggcgatgcgctgaaagccgccgaccagcacgccaaagcggaa
gctatcggtcaggcggatatgttcggcgtactggcggaagagccggagcaaatcgagcaa
tcctatgccagctgccagccgtggccggagcaggtggtgttagatggggaacgtgaaacg
ttggggctgtacctgacgggccaccccatcaatcagtatttaaaagaaattgagcgctat
gtcggcggggtaaggctcaaagacatgcatccgacagaacgtggtaaagtcaccacggct
gcggggctcgtgattgccgcaagggttatggtcaccaagcgcggcaatcgtatcggcatc
tgtacgctggatgaccgttccgggcgtctggaagtgatgttatttaccgacgcgctggat
aaataccagcagttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagcttt
gatgacttcagcggggggcttaaaatgaccgcccgcgaagtgatggatattgacgaagct
cgcgaaaaatacgctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccag
cttttaaaccgactccgtcagtctctggaaccccaccgctcggggaccattccagtacat
ctctactatcagagggcggatgcgcgtgcgcggctgcgttttggcgcaacgtggcgtgtc
tctccgagcgatcgtttacttaacgatctgcgtggcctcattggttcggagcaggtggaa
ctggagtttgactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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