KEGG   Salmonella enterica subsp. enterica serovar Enteritidis EC20090193: AU37_20400
Entry
AU37_20400        CDS       T03732                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
seno  Salmonella enterica subsp. enterica serovar Enteritidis EC20090193
Pathway
seno03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:seno00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AU37_20400 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:seno03021]
    AU37_20400 (rpoB)
   03400 DNA repair and recombination proteins [BR:seno03400]
    AU37_20400 (rpoB)
Enzymes [BR:seno01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AU37_20400 (rpoB)
Transcription machinery [BR:seno03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AU37_20400 (rpoB)
DNA repair and recombination proteins [BR:seno03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AU37_20400 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 SPG4
Other DBs
NCBI-ProteinID: AHP76232
Position
4238111..4242139
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKD
YVDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaagtttatcgag
caagatcctgaagggcagtacggcctggaagcagccttccgttccgtgttcccgattcag
agctacagcggtaattccgagctgcagtacgtcagctaccgccttggcgaaccggtgttt
gacgttcaggaatgtcagatccgtggcgtgacctattccgcaccgctgcgcgtaaaactg
cgtctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttctcagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcattccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtgcgtatcgaccgt
cgccgtaaactgcctgcgaccatcatcctgcgtgcgctgaactacaccactgagcagatc
cttgacctgttctttgagaaagtcgtcttcgaaattcgcgacaacaaactgcagatggag
ctgattccagaacgtctgcgcggcgaaaccgcgtcgttcgatatcgaagctaacggcaaa
gtgtacgttgaaaaaggccgtcgcattaccgcgcgtcacatccgtcagctggaaaaagac
gatatcaagcatatcgaagttccggttgagtacatcgcaggtaaagtcgtctctaaagac
tacgttgacgaatccactggcgagctgatctgcgcggcgaacatggagctgagcctggat
ctgctggctaagttgagccagtccggccacaaacgtatcgaaacgctgtttaccaacgat
ctggaccacggcccgtacatttctgaaacggtacgcgtcgacccaaccaacgatcgtctg
agcgcgctggtagaaatctaccgcatgatgcgccctggtgagccgccgactcgtgaagcg
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctatgacctgtctgcggtg
ggtcgtatgaagttcaaccgttctctgctgcgcgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgtcatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgtatccgttccgtcggcgaaatggcg
gaaaaccagttccgcgttggcctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttccgcc
gcagtgaaagagttctttggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgc
gaacgcgcaggcttcgaagttcgagacgtacacccgacgcactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatatggcttccttgagacgccgtaccgtcgtgtggttgatggcgtggtcact
gacgaaattcattacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagatctggtgacctgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtttccacccagcaggtg
gtctccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgacaagccgctggtg
ggtaccggtatggaacgtgctgtcgccgtcgactccggtgttactgcagtagctaaacgt
ggcggtactgttcagtacgtggatgcgtcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggtgaagcaggtatcgacatctataacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccatgtgtgtctctgggcgagccggttgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgctcggtcagaacatg
cgcgtggcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtttccgag
cgtgttgtccaggaagaccgtttcaccaccatccacattcaggaactggcgtgcgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggcgcggaagtgaccggcggc
gacattctggtcggtaaggtgacgccgaaaggtgaaacccagctgacgccggaagagaaa
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgcgta
cctaacggtgtctccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgctctggaaatcgaagagatgcagctcaagcaggcgaaaaaagacctg
tctgaagaactgcagatcctcgaagcgggcctgtttagccgtatccgtgcggtgttggtg
tccggcggcgttgaagctgagaagctcgacaaactgccgcgcgaccgctggctggaactc
ggtctgaccgacgaagagaaacaaaatcagctggaacaactggctgagcagtatgacgaa
ctgaaacacgagttcgagaaaaaacttgaagcgaagcgccgtaaaatcacccagggcgac
gatctggcgccgggcgtgctgaagatcgtgaaggtctatctggccgttaaacgccgtatc
cagccgggtgataagatggcaggtcgtcacggtaacaagggtgttatctctaagatcaac
ccgatcgaagacatgccttacgatgaaaacggcacgccggtcgacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtattggcgacaagattaacgccatgctgaaacagcagcaggaagtcgcgaaa
ctgcgcgaattcatccagcgtgcctacgatctgggcgccgacgttcgtcagaaagtcgac
ctgagcaccttcagcgatgatgaagtgctgcgtctggcagaaaacctgcgtaaaggtatg
ccgattgccacaccagtgtttgacggtgcgaaagaagcggaaatcaaagagctgctgaaa
ctgggcgacctgccgacctccggtcagatcaccctgttcgatggccgtacgggtgaacag
ttcgaacgtccggtaaccgtcggttacatgtacatgctgaaactgaaccacctggttgat
gacaagatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcagcgcttcggggagatggaagtgtgggcgctggaagct
tacggcgccgcctacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaatggt
cgtaccaagatgtataagaacatcgtggacggcaaccatcagatggaaccgggtatgccg
gaatccttcaacgttctgttgaaagagatccgctcgctgggcatcaacatcgaactggaa
gacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system