KEGG   Staphylococcus epidermidis PM221: SEB_02275
Entry
SEB_02275         CDS       T03289                                 
Name
(GenBank) Transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
sepp  Staphylococcus epidermidis PM221
Pathway
sepp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sepp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SEB_02275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sepp03400]
    SEB_02275
Enzymes [BR:sepp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     SEB_02275
DNA repair and recombination proteins [BR:sepp03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      SEB_02275
SSDB
Motif
Pfam: UvrB_inter DEAD TRCF CarD_TRCF_RID Helicase_C ResIII MFD_D3 UB2H AAA_22 RecG_dom3_C Glyco_hydro_115 IstB_IS21 DUF6606 DUF1421 NPV_P10
Other DBs
NCBI-ProteinID: CDM14807
Position
complement(2353608..2357117)
AA seq 1169 aa
MKSMIANYISEDNRFQELDEVFGQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLY
QADKIETDILQYVDDSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVP
LNGFKKWLTPVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGII
DIYPLIGTPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNE
LKKAYEYTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVSFMYEKPSTLIDYFQK
NAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQGFMKYESFDALLEQHAVAYF
TLFTSSMQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHQDYTVVVLVETETKVERIQ
SMLNEMHIPTVSNIHEDIDGGQVVVTEGSLSEGFELPYMQLVVITERELFKTRQKKQRKR
TKTISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTDQLFV
PVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGY
QYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPMDRLLCGDVGYGKTEVAVRA
AFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKS
GYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPR
TLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQS
IYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNAN
TLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGS
GFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEV
ELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEEQLFDVKDELIDRFNDYPIEVERLLDIV
EIKVHALHAGVELIKDKGKSIQIILSPKATEDINGEELFKQTQPLGRAMKVGVQNNAMNV
TLTKSKQWLDSLKFLVRCIEESMAIKDED
NT seq 3510 nt   +upstreamnt  +downstreamnt
gtgaaatcaatgattgcaaattacattagcgaagataatcgttttcaagaattagatgaa
gtcttcggccaagagaatattttagttacgggattatccccgtcagcgaaggcaacaatt
attgctgaaaaatatttaaaagatcataaacaaatgctactcgtaactaataatttatac
caagcagataaaatcgaaactgacattttacaatatgtagatgactcagaagtttataaa
tatcctgttcaagatataatgactgaagagttttctactcaaagtccacaattgatgagt
gagcgtgttagaacgttgactgcgttagcccaaggcgaaaaagggttatttattgtgcct
ttaaacggctttaaaaaatggctaacaccggttgatttatggaaagatcatcaaatgacg
cttaaagtaggtcaggatattgatgttgatgcattcttaaataaattagttaatatgggt
tatcgccgagaaagtgtagtgtcacatattggtgagttttcattgcgtggtggaatcata
gatatatatccgttgataggaacacctgtgagaatagagctatttgatactgaagttgat
tccatcagagactttgatgtagaaacacaacgttctaacgataatataaatcaagttgaa
atcacaacagctagtgactacattattactgatgaagtgatacaacacttacaaaatgaa
cttaaaaaagcatatgaatatacacgccctaaaattgaaaagtccgtacgtaatgattta
aaagagacatatgaaagttttaagttgtttgaatctacctttttcgatcatcaattgtta
cgacgtcttgtttcatttatgtatgaaaaaccatcaacccttattgactattttcaaaaa
aacgcgattattgtagttgatgagtttaatcgtattaaggaaacagaagaaacacttaca
acagaagttgaagattttatgagtaacttaattgagagtggaaatggatttatcggacaa
ggatttatgaagtatgaaagttttgacgcattattagagcaacatgccgttgcatatttc
acattatttacatcttcgatgcaagtaccattacaacatattattaagttctcttgtaaa
ccagttcaacaattttatggtcaatatgacattatgcgctcggaatttcaaagatacgtg
catcaagattacactgtcgtagttcttgttgaaactgaaacaaaagttgaacgtattcaa
tcaatgcttaatgaaatgcatattccaacagtatcaaatattcacgaagatattgatggt
ggtcaagttgtagtgacggaaggtagtctttctgaaggctttgaattaccttatatgcag
ttggtagtcatcacagaaagagaattatttaaaacaagacaaaagaaacaacgtaaacgt
acaaaaacgatttctaatgctgaaaaaataaaatcatatcaagacctaaatgtgggcgat
tatatagtgcatgtgcatcatggtgtcggacgatacttaggtgttgaaacactagaagtt
ggagatacacatcgcgactatattaaattgcaatataaaggaactgatcaattattcgtt
ccagttgatcaaatggatcaagttcaaaagtatgtggcttctgaagataagtcgcctaga
ttaaataaattaggcgggacagaatggaaaaaaacaaaggcgaaagttcaacaaagtgtt
gaagatatagctgatgaattaattgatttgtataaagaacgtgaaatgtctgtaggttat
caatacggccaagatactgcagagcaatcagcatttgagcatgattttccatatgaatta
acacccgatcaaagtaagtcaatcgatgaaattaaaggtgacatggaaagagcaagacct
atggaccgtcttctttgtggtgatgtgggatatggtaaaactgaagtggctgtccgtgca
gcgtttaaagctgtcatggatggtaagcaagttgcgtttttagtaccaacaacgattctt
gcacaacaacactacgaaacactacttgaacgtatgcaagattttccggtcgaaattcaa
ttggtaagtcgattccgcacagctaaagaaataagggaaactaaagaagggctcaaatca
ggatatgttgacattgtcgtaggtacacataaattattaggtaaagatattcaatataaa
gatttgggattgcttattgttgatgaagaacaacgttttggagtgcgacataaagaacgc
attaaaactttgaaaaaaaacgttgatgtactgacgcttactgcaacaccaataccaaga
acattgcatatgagtatgttaggtgtacgtgacttatcagtgattgaaacaccacctgaa
aatcgttttcctgtacaaacttatgtcttagaacagaatacgaactttattaaagaggca
ttagagcgtgaattatctcgcgatggacaagtattttatttgtataacaaagtgcagtcc
atttatgaaaaaagagaacaacttcaaaggttaatgcctgacgctaacattgctgtagca
catggccaaatgactgaacgtgatttagaggaaacaatgttaagctttattaatcacgag
tacgatattttagtaacgactacaattattgaaacaggtgtagatgtaccaaatgctaat
actttaatcatagaagaggctgatcgttttggtttaagccagctataccaattaagagga
cgtgtaggacgttcaagtagaattggttacgcttatttcttacatccagctaacaaagtg
ttaaatgagactgctgaagagcgattgcaagctattaaggagtttaccgaactaggttca
ggttttaaaatcgctatgcgagatttaaatattcgtggtgcaggcaatttactcggtaag
caacaacatggctttattgattcggttggtttcgatttatactctcaaatgttagaagaa
gcagtaaacgaaaaacgtggcattaaagaagaatcgccggatgcaccagatattgaagta
gaattgcacttagatgcttatttaccagctgaatatatacaaagtgaacaggctaaaatt
gagatttataaaaaacttcgaaaagtagaaactgaagaacaacttttcgatgtcaaagat
gaattaatagatcgttttaatgattatccaattgaagtcgaacgattattagatattgtt
gaaatcaaagtccacgctctacatgcgggtgtcgaattgataaaagacaaaggcaaatct
atacaaatcattttatcacctaaagcgactgaagatattaatggagaagaattgtttaaa
cagacgcaacctcttggtagagcaatgaaagttggcgtgcaaaataatgcaatgaatgta
acgctaacaaaatcaaaacaatggttagatagtttgaaattcttagttagatgtattgaa
gaaagtatggcgattaaagatgaagactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (15)   
   Pfam (15)   
All databases (24)   

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