KEGG   Staphylococcus epidermidis SEI: DP17_260
Entry
DP17_260          CDS       T03343                                 
Name
(GenBank) viral (Super1) RNA helicase family protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
seps  Staphylococcus epidermidis SEI
Pathway
seps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:seps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    DP17_260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:seps03400]
    DP17_260
Enzymes [BR:seps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     DP17_260
DNA repair and recombination proteins [BR:seps03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     DP17_260
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 AAA_22 AAA AAA_12 HHH_5 nSTAND3 T2SSE Rad17 HHH_3 AAA_14 AAA_16 Mg_chelatase Zeta_toxin AAA_18 PIF1 TsaE AAA_29 UvrD-helicase AAA_28 DUF815 RsgA_GTPase NB-ARC AAA_17
Other DBs
NCBI-ProteinID: AIR82001
Position
complement(284246..286678)
AA seq 810 aa
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDV
YTFKGQVVQHPRYGKQLKAETFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGEN
AINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIMIRLHDLGFGPKLSMAIYQFY
MGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSEL
KSVQNLYRIKTNTSKLKEIEQSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTG
GPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLAAPTGRASKRLHESTGLEAMT
IHRLIGWNQDTRPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSF
IRCGTNQIPDVVDKVVKSAVAKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDD
REIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFWAKENALNKDVLVVDFEGNEI
TFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKDNLTTNKQTINEQKENNNHLDLKNEKE
NDIQLNESTIFQIDPMINMGEMTPYDFVER
NT seq 2433 nt   +upstreamnt  +downstreamnt
atgtctgaccctacactttttgattattcaatgatcaaaggtacagttgatgctatttta
tttcaaaatacggataatttttatactgttctaaaagtagatactatagaatcaaatgaa
aaatttgatagtatgccaactgtggtagggtttcttcccaatgtagttgaaggcgatgtt
tatacttttaaagggcaagtcgtacaacatccacgttatggtaagcaattaaaggctgaa
acatttgaaaaagaattacctcaaactaaagaagccattattagttacttatcaagtgat
ttatttaaaggcatcggtaaaaaaacggctcaaaacattgtaaatacactaggtgaaaat
gctataaatgatattttaactcgtccagaaatcttagaaagtgtacctagtttaccaaag
aagaaacaaaagcaaattgctgatcagattaatgcaaaccaggaatctgagaaaattatg
atacgtttacacgacctagggtttggtccgaaattatcaatggctatatatcagttctat
atgggtgatactttaaatgtcttagataaaaatccttaccaattagtatatgacattaaa
ggtattggttttaataaggctgaccaacttgctcgaaatgtcggtattgagccacattca
cctgaaagattaaaagcagcattattatttacgttagaagaagaatgtattaaacaagga
catacatatctacctcgtacaattgttatagaaacaacacaaaatttactcaatgaagat
attgagaaaccaattgaaacagagcaattactagaaatcattgacgttttatcagaagag
aaaaagttaatatctgaagctgatcaggtatcaattccaagtttatactattcagaattg
aaaagtgtgcaaaacttataccgaattaaaacaaacacatctaaattaaaagaaatagaa
cagtctgatttacaaatacatattggtgatattgagtcacagaatgaggttaattactct
gcctctcaaaaagaagcgcttgaaacagcaataaattctaaaattatgcttttaactggt
ggtccgggtaccggtaaaaccacagtcattaaaggtatagttgaattatatgcagaaata
catgggctctcgctcgattatgatgattacaatgaagatgattatccagtagtgttagct
gcacccactggtcgtgcttctaagcgccttcacgaatcgacaggtttagaagcaatgaca
attcatcgtttaatcggttggaaccaagatacacgaccacaggatattttagaaaatgag
atcaatgcaagacttattattatcgatgaaatgtcaatggtagatacttggttgttccat
caatttttaagcgctgtgcctttagaagcacaaattgtatttgtcggagatgaagatcag
ttaccatcagtaggtccaggacaggtatttaaagaccttattgattctgaaataataccg
cgtgttaatcttaccgaagtatatcgtcagcaagatggttccagtattattgacttagct
caccgtatgaaattaaatgaacctatcgatattactaaacgttatcatgatcgtagtttt
attcgttgtggtacgaatcaaattccagacgttgttgataaagtagttaaaagcgctgta
gctaaaggctatgatatgagtgatatacaagttttggctcctatgtataaaggtaacgct
ggtattaagagacttaaccaagttctacaatctattcttaatccgaagcaacaagatgat
cgtgaaatagaatttggtgaagctgtgtttagaaaaggggataaagtacttcagttagtt
aatcgacctaatgataatatatttaatggggatataggtataatagtaggtatattttgg
gccaaagaaaatgctctaaataaggatgtgttagttgtagattttgaaggtaatgaaatt
acatttactaaacaagatttaatggaactaacacatgcatattgtacatctatccataaa
tcacaaggttcagaatttcctattgtaattatgcctattgttagacaatattataggatg
ttacaacgtcccattctttatacaggattaactagagctaaacaatcacttgttttgctt
ggtgaacaagaagcatttgatataggtttaaaaacaaatggacaaatacgattaacgcaa
ttaaatgatttgttaaaatcgtattttggacaaaacaaagataatttaactacaaataaa
caaacgattaacgaacaaaaagaaaataacaatcatctggatttgaaaaatgaaaaagaa
aatgatatccaattaaacgagtcgacaattttccaaatcgatccaatgattaatatgggg
gaaatgacgccatatgacttcgttgaacgttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (29)   
   Pfam (29)   
All databases (38)   

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