KEGG T00229: SERP1079

Staphylococcus epidermidis RP62A: SERP1079

Entry

SERP1079 CDS T00229

Gene name

lpdA

Definition

2-oxoisovalerate dehydrogenase E3 (EC:1.8.1.4)

Orthology

K00382

dihydrolipoamide dehydrogenase [EC:1.8.1.4]

Organism

ser Staphylococcus epidermidis RP62A

Pathway

ser00010	Glycolysis / Gluconeogenesis
ser00020	Citrate cycle (TCA cycle)
ser00260	Glycine, serine and threonine metabolism
ser00280	Valine, leucine and isoleucine degradation
ser00620	Pyruvate metabolism
ser01100	Metabolic pathways
ser01110	Biosynthesis of secondary metabolites
ser01120	Microbial metabolism in diverse environments

Module

ser_M00307

Pyruvate oxidation, pyruvate => acetyl-CoA

Class

Metabolism; Carbohydrate metabolism; Glycolysis / Gluconeogenesis [PATH:ser00010]
Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:ser00020]
Metabolism; Carbohydrate metabolism; Pyruvate metabolism [PATH:ser00620]
Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:ser00260]
Metabolism; Amino acid metabolism; Valine, leucine and isoleucine degradation [PATH:ser00280]

SSDB

Motif

Pfam:

Pyr_redox_2 Pyr_redox_dim Pyr_redox DAO Pyr_redox_3 HI0933_like FAD_oxidored NAD_binding_8 AlaDh_PNT_C GIDA FAD_binding_2 3HCDH_N NAD_binding_7 Thi4 TrkA_N FAD_binding_3 Trp_halogenase 2-Hacid_dh_C Lycopene_cycl XdhC_C UDPG_MGDP_dh_N K_oxygenase NAD_Gly3P_dh_N

Other DBs

NCBI-GI:

57866999

NCBI-GeneID:

3242774

UniProt:

Q5HP34

Position

complement(1124207..1125628)

AA seq 473 aa
MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV
NHTIKNAHTFGIDVNHFKINFPKILERKDAIVKQLHEGVNQLMKHHHIDIYNGIGRIMGT
SIFSPQSGTISVEYEDGESDILPNKNVLIATGSSPQSLPFIKFDHKQILSSDDILRLNTL
PQRLAIIGGGVIGLEFASLMNDLGADVVVIEANDRVLPTESTQVASLLKEELTNRGVTFY
ENIQLTKDHFNQTDKGVTINISDEPVQFDKVLVAIGRKPNTNDIGLNNTQIKTSDAGHII
TNGYQQTEDKHIYAAGDCIGQLQLAHVGSKEAIVAVEHMFDCSPIPINYDLIPKCVYTNP
EIASIGKNLEQAKKAGIKAKSIKVPFKAIGKAIIEDVTQSKGFCEMVVNKDDDEIIGLNM
IGPHVTELINEISLLQFMNGSSLELGLTTHAHPSLSEVVMELGLKANGQAIHV

NT seq 1422 nt +upstreamnt +downstreamnt
atgtcagaaaaacaatacgatttagtcgtgttaggtggtggtacggcaggatatgtagcc
gccatcagagcttctcaattaggaaaaaaagtagcgatagtagaaaaatcactcttaggt
ggtacgtgtttacataaaggatgtatacctactaaagcacttttaaaatcggctgaagtc
aatcatactattaaaaacgcgcatacatttggaattgatgtcaatcattttaaaattaat
ttccctaaaattttagaacgtaaagatgctattgttaagcaattgcatgaaggcgtcaat
caactgatgaaacatcatcatatagatatttataacggtattggacgaattatgggaaca
tctatattttctcctcaaagcggtacaatttctgtggaatatgaagacggcgaatcagat
atactccctaataaaaatgtgcttatagctactgggtcatcaccacagtctcttccgttc
attaaatttgaccataaacaaatactatcgagtgatgatatcctaaggttaaatacacta
ccacaaagattagcaatcataggtggaggtgttattggtttagaatttgcatctctgatg
aatgatttaggtgctgatgtagtagtaatcgaagcgaatgacagagttcttcctaccgag
agcacacaagttgcgtcattgctaaaagaagaattaactaatcgaggcgttacattctac
gaaaatattcaattgaccaaagatcattttaaccaaactgataagggtgtaactattaat
atttcagatgagcccgtccaattcgataaagtacttgttgcaattggtagaaagcctaat
acaaatgatattggtttaaataacactcaaattaagacttctgatgctggtcatattata
acaaatggttatcagcaaactgaagataaacatatatacgcagcaggagattgtataggg
caattacaattggcacacgtcggttcaaaagaagctatagttgcagttgaacatatgttt
gattgttctcctatacctatcaattatgacctgataccaaaatgtgtttatacaaaccca
gaaattgcttcaattggtaaaaatttagaacaagcaaaaaaagcaggcatcaaagcaaaa
agtatcaaagttccttttaaagctataggaaaggcaataattgaggatgtaacccaatca
aaaggattttgcgagatggtagttaacaaagatgacgatgaaatcataggtcttaatatg
atagggccacatgttacagaattaataaatgaaatttcattgttacaatttatgaatggc
tcatctttagaacttggtttaacaacacatgcacatccttcattatccgaggtagtcatg
gaattaggtttaaaagctaatggtcaagcaattcatgtatag

All links

Pathway (9)   
   KEGG PATHWAY (8)   
   KEGG MODULE (1)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (52)   

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