KEGG   Prodigiosinella confusarubida ATCC 39006: Ser39006_021325
Entry
Ser39006_021325   CDS       T05290                                 
Name
(GenBank) D-alanine--D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
sera  Prodigiosinella confusarubida ATCC 39006
Pathway
sera00470  D-Amino acid metabolism
sera00550  Peptidoglycan biosynthesis
sera01100  Metabolic pathways
sera01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:sera00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    Ser39006_021325
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Ser39006_021325
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    Ser39006_021325
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:sera01011]
    Ser39006_021325
Enzymes [BR:sera01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     Ser39006_021325
Peptidoglycan biosynthesis and degradation proteins [BR:sera01011]
 Precursor biosynthesis
  Amino acid ligase
   Ser39006_021325
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp CPSase_L_D2 ATP-grasp_4 RimK ATP-grasp_3 GARS_A
Other DBs
NCBI-ProteinID: AUH06430
UniProt: A0A2I5TC04
Position
4673786..4674883
AA seq 365 aa
MNKIRVGVVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVTLLGIDKQGEWHINDASNYLLN
AENPTLIALNRSNQNVALIPGQTHHQLIETHSANALSQLDVIFPIVHGTLGEDGSLQGLL
RMANIPFVGSNVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRSQHNFATVTARLGL
PLFVKPANQGSSVGVSKARNEAEFRQAVELAFRYDHKVLVESAIAGREIECAVLGNDSPQ
ASVCGEIELHDEFYSYDTKYINEDGAAVTIPAKLSPETHDRIRAVALTAFQALECQGMAR
VDVFLTNDEDVIVNEVNTLPGFTNISMYPKLWEASGIDYTSLITILIELALERHTQDSNL
QSSVR
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgaataagattcgggttggtgtggtgtttggcggaaaatcggcggaacatgaagtgtca
ctacaatcggcaaaaaatatcgtcgatgccatcgataaaaccagatttgacgtcacactg
ctgggcattgataagcagggagagtggcacattaatgatgcatccaattatttactgaat
gcggaaaatccgacgttgattgccctcaaccgctcaaatcagaatgtcgcgctgataccg
ggccagactcatcatcagttgattgagacgcacagtgccaacgcattgtcacaactggat
gtgattttcccgattgtccacggcacacttggcgaagacggatccctgcaaggcttgctg
cgcatggccaatatcccgtttgtcggcagtaacgtgctgggctccgccgtcagcatggat
aaagatgtcaccaagcgtctgctgcgtgatgccggtttgcaggttgcgccgtttgtgaca
ctcacccgcgctaatcgtagtcagcataatttcgccaccgtgaccgcccggcttgggctg
ccactgtttgttaaaccggctaatcagggttcttcggtgggcgtcagcaaagcaagaaac
gaggccgaattccgtcaggccgtcgagctggcgttccgttatgatcacaaggtgctggtg
gagtccgccattgccggacgcgaaatcgaatgcgccgtcctgggtaacgattcaccacaa
gccagcgtgtgcggggaaattgagctccatgacgagttttactcatacgataccaagtac
atcaacgaagatggtgcggcagtgacgataccggccaagctgtcaccggaaacccatgac
cgtatccgcgccgtggcattaaccgcttttcaggcactggaatgtcaaggtatggctcgg
gtggatgtgtttctgaccaacgatgaagacgtcatcgtcaacgaagtgaataccttgccc
ggttttaccaacatcagtatgtatcccaagctgtgggaagccagcggtattgactacacg
tcgctgattaccatcctgatcgagctggcgctggagcgtcatacgcaggacagtaacctg
caaagctcggtacgttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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