KEGG   Serratia sp. FS14: L085_10910
Entry
L085_10910        CDS       T03313                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
serf  Serratia sp. FS14
Pathway
serf03030  DNA replication
serf03410  Base excision repair
serf03420  Nucleotide excision repair
serf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:serf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L085_10910 (ligA)
   03410 Base excision repair
    L085_10910 (ligA)
   03420 Nucleotide excision repair
    L085_10910 (ligA)
   03430 Mismatch repair
    L085_10910 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:serf03032]
    L085_10910 (ligA)
   03400 DNA repair and recombination proteins [BR:serf03400]
    L085_10910 (ligA)
Enzymes [BR:serf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     L085_10910 (ligA)
DNA replication proteins [BR:serf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     L085_10910 (ligA)
DNA repair and recombination proteins [BR:serf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     L085_10910 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     L085_10910 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     L085_10910 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      L085_10910 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc zf-NADH-PPase
Other DBs
NCBI-ProteinID: AIA47621
Position
2405263..2407284
AA seq 673 aa
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFEEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITTNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSERAQRRTGSEEVLAFYRQVEQDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVVAEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGE
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggaatcgataatccaacaaatcaatcaactacgagccacactgcgccatcatgaatac
cagtatcatgtgctggatgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagcgcgcatccggagctgatcaccgccgattcgccgacccag
cgcgtgggcgcggcgccgctggcggcgttcgaccaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgtttgaagaagagagcttcctggcgttttacaagcgcgtgcaggac
aggctcaaaagcagcgatccgctgaccttctgctgcgagctgaagctggacggcctggcg
gtcagcctgctgtatgaagacggcgagctggtgcgcgcggcgacgcgcggcgacggcacc
accggcgagaacatcactaccaacgtgcgcaccattcgcgccatcccgctgcgcctgacc
ggcgacaacatcccgcgccggctggaagtgcgtggcgaagtgttcatgccgcaggccggg
tttgaacagatgaacgaagaagcccggcgcaaagacggcaaggtattcgccaacccgcgc
aacgccgccgccggctcgctgcgccagctcgatccgcgcattaccgccaaacgcccgctg
accttcttctgctatggcgttggcctgctggaaggcggcgagctgccgcgcagccacttt
gagcgcctgatgcagttcaaggcctggggcctgccggtcagcgagcgcgcccagcgccgc
accggcagcgaggaagtgctggcgttctatcgccaggtcgagcaggaccgcgcacagctc
ggtttcgatattgacggcgtggtgatcaagattgacgacatcgatctgcaggaaacgctg
ggcttcgtggcgcgtgcgccgcgttgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgtgaagtggaatttcaggttggccgcaccggtgcgattacgccggtg
gcgcgccttgagccggtgctggtggccggggtgaccgtcagcaacgccaccttgcacaac
gccgatgaaattgaacgcctggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggcgtactggaagaccgtcggccgcaggatgcgcgc
gaagtggtgttcccgctgcactgcccggtgtgcggttccgacgttgagcgcgtggaaggc
gaggccgtggcgcgctgcaccggcggtcttatctgcggcgcgcagcgcaaagaggcgtta
aagcatttcgtttcccgccgcgcgctggacgttgaaggcatgggcgacaagatcatcgag
cagctggtggacaaggagtacgtgaagaacccggccgatctgttccggctgtccgccggc
attctgaccggcctggatcgcatggggccgaaatcggcgcagaatctggtcaacgcgttg
gagaaatccaagcagaccaccttcgctcgtttcctgtatgcgctcggcattcgcgaggtc
ggcgaagcgaccgccgccaacctggccgcgcatttcggatcgctcgagaagctgttcgcc
gccgacattgaggcgctgaaagaggtgccggacgtcggcgaagtggtggccaaacacacg
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagctggtgggggccgag
atcggcatccactggccggcgccggtggtggtggtggcggaagagatagacagcccgttc
gccggcaaaaccgtggtgctgaccggctcgctgagccagctgtcgcgcgacgaggccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtgtcgaagaaaaccgatctg
gtgatcgccggcgaggcggcgggttccaagctggcgaaggcgcaggagctgggtatcgcc
gtgatcgacgaagcggagatgatccgcttgctgggtgagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (29)   

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