KEGG   Sinorhizobium fredii USDA 257: USDA257_c47620
Entry
USDA257_c47620    CDS       T02188                                 
Symbol
rhlE2
Name
(GenBank) ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
sfd  Sinorhizobium fredii USDA 257
Pathway
sfd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    USDA257_c47620 (rhlE2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfd03019]
    USDA257_c47620 (rhlE2)
Enzymes [BR:sfd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     USDA257_c47620 (rhlE2)
Messenger RNA biogenesis [BR:sfd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     USDA257_c47620 (rhlE2)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Helicase_RecD AAA_22 UTP25
Other DBs
NCBI-ProteinID: AFL53298
UniProt: I3XBP2
Position
4935127..4936668
AA seq 513 aa
MSTFKELGLSQDILATLSANGFEKPTPIQTQAIPLVLKGHDLIGLAQTGTGKTAAFGLPM
IEKLVADGKRPDPRNIRALVLAPTRELVNQIATNLKLFVKKSPLKVGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLIARKAVTLTQGRYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVTPPGKAADKVEQYVHFVPGKDLKTTILKRT
LTDNPDGLSLVFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGDAPADQARPSKGRGGRGNGQQRGNGGGQHRGNGGGQHRGNGDGQRP
KRPAREPAVAGGFAGDELLRDDRPQKSERRDHRAAAPGHHDGRSEGNRNHENRKHHGRPG
AKQEGRRHGDGQPGNRGERGQGVRRADNGGRQG
NT seq 1542 nt   +upstreamnt  +downstreamnt
ttgtccactttcaaagagctcggtctctcgcaggacatcctggcgaccctctccgccaat
ggcttcgagaagccgacgcccatccagacgcaggccattccgcttgtcctcaagggtcat
gacctcatcggtctcgcccagacgggcaccggcaagacggccgcctttggcctgccgatg
atcgagaagctcgtcgcggacggcaagcgcccggacccgcgcaacatccgcgccctcgtg
cttgcccccacccgcgaactcgtcaaccagatcgccaccaacctcaagctcttcgtgaag
aagagcccgctgaaggtcggcgtcgtggtcggcggcgtctcgatcaacaagcaaaccgaa
caactggcccgcggcgtcgacattctcgtcgcaacacctggccgcctgctcgaccttatt
gcccgtaaggccgtgacgctgacgcagggccgctacctcgtgctcgacgaggccgaccag
atgctcgacctcggcttcatccacgacctgcgcaagatttcgaagctggtaccgaagaac
cgccagacgctgctcttctcggcaactatgccgaaactgatcgccgagcttgccggcgag
tacctgaccgatccggtcaaggtcgaggtcacgcctcccggcaaggccgccgacaaggtt
gagcaatatgtccatttcgttccgggcaaggacctgaaaacgacgatcctgaagcggacg
ctgaccgacaatcccgatggtctgtcactggtcttcagccgcacgaagcacggcgccgag
aagctgatgaagcatctggaccatgtcggcttcaaggccgcctcgatccacggcaacaag
agccagggtcagcgcgagcgggcactgaaggcgttccgcgacggcgagatccgcgtcctc
gtcgcgaccgatgtcgccgcccgtggcatcgacattccgggcgtcacccatgtctacaac
tacgatctgccggaagttccggatgcctatgtgcatcgcatcggccgcaccgcccgcaac
ggccgcgacggcatcgcgatcgccttctgtgcgccggacgaaatccgcctgctgcgcgat
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgatgcgccggccgaccag
gcccgcccctccaagggtcgcggaggtcgcggcaatggccagcagcgcggcaatggtggt
ggtcaacatcgcggcaatggcggtggtcagcatcgcggcaatggcgatggccagcgcccg
aaacggcccgcgcgtgaaccggccgtggccggtgggtttgccggtgacgagctactccgc
gacgaccgcccgcagaagagcgagcgccgcgaccatcgcgccgcagcccccgggcatcac
gacggccggtcggaaggcaaccgcaaccacgagaaccggaagcaccatggccgcccgggc
gcgaagcaagagggacgccgtcatggcgacggccagcccggcaatcggggcgagcgtggt
caaggcgtgcgccgcgcagacaatggcggccggcagggctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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