KEGG   Shigella flexneri 2002017 (serotype Fxv): SFxv_1255
Entry
SFxv_1255         CDS       T01883                                 
Symbol
holB
Name
(GenBank) DNA polymerase III delta prime subunit
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
sfe  Shigella flexneri 2002017 (serotype Fxv)
Pathway
sfe03030  DNA replication
sfe03430  Mismatch repair
sfe03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sfe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SFxv_1255 (holB)
   03430 Mismatch repair
    SFxv_1255 (holB)
   03440 Homologous recombination
    SFxv_1255 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfe03032]
    SFxv_1255 (holB)
   03400 DNA repair and recombination proteins [BR:sfe03400]
    SFxv_1255 (holB)
Enzymes [BR:sfe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SFxv_1255 (holB)
DNA replication proteins [BR:sfe03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SFxv_1255 (holB)
DNA repair and recombination proteins [BR:sfe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SFxv_1255 (holB)
SSDB
Motif
Pfam: DNA_pol3_delta2 DNApol3-delta_C HolB_lid EPF
Other DBs
NCBI-ProteinID: ADA73499
UniProt: D2ACV7
Position
1200835..1201839
AA seq 334 aa
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV
TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSCLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggcatgggcgatgatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacgcatcccgattactacaccctggct
cccgaaaaagggaaaaatacgctgggcattgatgcggtacgtgaggtcaccgaaaagctg
aatgagcacgcacgcctaggtggtgcgaaagttgtctgggtaaccgatgctgccttactg
accgacgccgcggctaacgcattgctgaaaacgcttgaagagccaccagcagaaacctgg
tttttcctggctacccgcgagcctgaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgcctccagaacagtacgccgtgacttggctttcacgcgaagtg
acaatgtcacaggatgcattacttgccgcattgcgcttaagcgccggttcgcctggcgcg
gcactggcgttgtttcagggagataactggcaggctcgtgaaacattgtgtcaggcgttg
gcatatagcgtgccatcgggcgactggtattcgctgctggcggcccttaatcatgaacaa
gctccggcgcgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggcgctgcgcaggtgaccaatgttgatgtgccgggcctggtcgccgaactggcaaaccat
ctttctccctcgtgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgtcacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgttaccggttcctcatctttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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