KEGG T01731: SFHH103

Sinorhizobium fredii HH103: SFHH103_06053

Entry

SFHH103_06053 CDS T01731

Gene name

ligC

Definition

DNA ligase, putative (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sfh Sinorhizobium fredii HH103

Pathway

sfh03410	Base excision repair
sfh03420	Nucleotide excision repair
sfh03430	Mismatch repair
sfh03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sfh03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sfh03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sfh03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:sfh03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C

Other DBs

NCBI-GI:

378764036

NCBI-GeneID:

11800241

UniProt:

G9AHI1

Position

pSfHH103e:complement(1293839..1294930)

AA seq 363 aa
MPSPAHRKPTKETAPSRPAAKAKAIDVVSAGGFALPVSTAPMEARSAPELPSDGAWQYEP
KWDGFRCLAFKSGGEVDLRAKSGKPLGRFFPEVIALLRELGASQFVLDGELVIEVDGRLS
FDALQMRLHPAESRVQKLSQQTPARLILFDMLVDAKGAVLTDKPLSSRRAALEAFATRNV
IPDKLELSPFTLARQEAEHWLTSWEAGATDGVVAKRRDGPYECGERAMVKVKRLKTADCV
VGGFRYESGSDKIGSLLLGLYDTDGTLNHVGFTATISDKERPALTRRLEALREPPGFTGN
APGGPSRWSAERSGEWQPVRPELVVEVRFDHVSSRRFRHGTKLMRWRPDKDPRQCTYEQI
EPR

NT seq 1092 nt +upstreamnt +downstreamnt
atgccgtcacccgcgcaccgaaaaccgaccaaggagaccgcgccgtcgcgcccggcggca
aaggcaaaggcgatcgacgtggtatccgccggcggcttcgctctgccggtcagcacggca
ccgatggaagcacgctccgccccagagcttccgagcgacggggcatggcaatatgagccg
aaatgggacggcttccgctgtcttgccttcaaatccggcggggaggtcgatctcagggcc
aaatccggcaagccgctcgggcgtttcttcccggaggtcatcgcgctgttgcgcgagctc
ggcgcctcacaattcgtgctcgacggcgagctggttatcgaagtcgacgggcggctttcc
ttcgacgccctgcagatgcgtttgcacccggcggaaagccgcgtccagaaactctcccag
caaacgcctgcacgcctcatcctgttcgacatgctggtcgacgcgaagggagccgtcctg
accgacaagccgctttcttcccggagagctgcactcgaagcgtttgccaccaggaacgtc
atcccggacaagctcgagctttcgcccttcacactcgcccggcaggaggcggagcactgg
ctcacctcctgggaagcgggcgccactgacggggtcgtcgccaagcggcgcgacggccct
tacgaatgcggcgagcgggcgatggtgaaggtcaaacgcctgaagacggctgattgtgtc
gtcggcggcttccgttacgagagcggcagcgacaaaatcggctccctcctgcttggcctt
tacgacacggacgggacgctcaaccatgtgggcttcaccgcgacgatttccgacaaggaa
cggcccgcattgacgcgtcggctcgaggctttgcgggagccgcccggcttcaccggcaat
gcgcctggaggcccgagccgctggagcgcggagcgcagcggcgaatggcaaccggttcgt
ccggagctggtcgtcgaggtgaggttcgatcacgtcagcagccgccgctttcgccatgga
acgaaactgatgcgctggcgtcccgacaaggacccgcgccaatgcacctatgagcagatc
gagccgcggtga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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