KEGG   Shigella flexneri 301 (serotype 2a): SF4334
Entry
SF4334            CDS       T00097                                 
Symbol
vacB
Name
(RefSeq) hypothetical protein
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sfl  Shigella flexneri 301 (serotype 2a)
Pathway
sfl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sfl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SF4334 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sfl03019]
    SF4334 (vacB)
   03016 Transfer RNA biogenesis [BR:sfl03016]
    SF4334 (vacB)
Enzymes [BR:sfl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     SF4334 (vacB)
Messenger RNA biogenesis [BR:sfl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SF4334 (vacB)
Transfer RNA biogenesis [BR:sfl03016]
 Prokaryotic type
  tRNA degradation factors
   SF4334 (vacB)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind OB_Dis3 MetOD2 RNA_pol_Rbc25 YqfQ Sucrose_synth
Other DBs
NCBI-GeneID: 1025395
NCBI-ProteinID: NP_710044
UniProt: P30851
Position
4511430..4513913
AA seq 827 aa
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHI
EGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKD
DLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVV
PDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDI
ALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNP
QVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH
LEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILA
NISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESV
ADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNV
FKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRV
EVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPD
SAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq 2484 nt   +upstreamnt  +downstreamnt
gtgacgaaaatcttcatcagagatgacaacggaggaaccgagatgtcacaagatcctttc
caggaacgcgaagctgaaaaatacgcgaatcccatccctagtcgggaatttatcctcgaa
catttaaccaaacgtgaaaaaccggccagccgtgatgagctggcggtagaactgcacatt
gaaggcgaagagcagcttgaaggcctgcgtcgccgcctgcgcgcgatggagcgcgatggt
caactggtcttcactcgtcgtcagtgctatgcgctgccggaacgcctcgacctggtgaaa
ggtaccgttattggtcaccgtgatggctacggctttctgcgggttgaagggcgtaaagat
gatttgtatctctccagcgagcagatgaaaacctgcattcatggcgatcaggtgctggcg
cagccgctgggtgctgaccgtaaaggtcgtcgtgaagcgcgtattgtccgcgtactggtg
ccaaaaaccagccagattgttggtcgctactttaccgaagcgggcgtcggctttgtggtt
cctgacgatagccgtctgagcttcgatatcttaatcccgcccgatcagatcatgggcgcg
cggatgggctttgtggtcgtagtcgaactgactcagcgtccgactcgccgcaccaaagcg
gtgggtaaaatcgtcgaagtgctgggcgacaatatgggcaccggcatggcggttgatatc
gctctgcgtacccatgaaattccgtatatctggccgcaggctgttgagcaacaggttgcg
gggctgaaagaagaagtgccggaagaagcaaaagcgggccgtgtcgatttgcgcgattta
ccgctggtcaccattgatggcgaagacgcccgtgactttgacgatgcagtttactgcgag
aaaaaacgcggcggcggctggcgtttatgggtcgcgattgccgacgtcagctactatgtg
cgtccgccaacgccgctggacagagaagcgcgtaaccgtggcacgtcggtgtacttccct
tcgcaggttatcccgatgctgccggaagtgctctctaacggcctgtgttcgctcaacccg
caggtagaccgcctgtgtatggtgtgcgagatgacggtttcgtcgaaaggccgcctgacg
ggctacaaattctacgaagcggtgatgagctctcacgcgcgtctgacctacaccaaagtc
tggcatattctgcagggcgatcaggatctgcgcgagcagtacgccccgctggttaagcat
ctcgaagagttgcataacctctataaagtgctggataaagcccgtgaagaacgcggtggg
atctcatttgagagcgaagaagcgaagttcattttcaacgctgaacgccgtattgaacgt
atcgaacagacccagcgtaacgacgcgcacaaattaattgaagagtgcatgattctggcg
aatatctcggcggcgcgtttcgttgagaaagcgaaagaaccggcactgttccgtattcac
gacaagccgagcaccgaagcgattacctctttccgttcagtgctggcggagctggggctg
gagctgccgggtggtaacaagccggaaccgcgtgactacgcggaactgctggagtcggtt
gccgaccgtcctgatgcagaaatgctgcaaaccatgctgctacgctcgatgaaacaggcg
atttacgatccagaaaaccgtggtcacttcggtctggcattgcagtcctatgcgcacttt
acttcgccgattcgtcgttatcctgacctgacgctgcaccgcgccattaaatatctgctg
gcgaaagagcaggggcatcagggcaacaccactgaaaccggcggctaccattattcgatg
gaagagatgttgcaactgggtcagcactgttcgatggcggaacgtcgtgccgacgaagca
acgcgcgatgtcgctgactggctgaagtgtgacttcatgctcgaccaggtaggtaacgtc
tttaaaggcgtaatttccagcgtcactggctttggcttcttcgtccgtctggacgacttg
ttcattgatggtctggtccatgtctcttcgctggacaatgactactatcgctttgaccag
gtagggcaacgcctgatgggggaatccagcggccagacttatcgcctgggcgatcgcgtg
gaagttcgcgtcgaagcggttaatatggacgagcgcaaaatcgactttagtctgatctcc
agtgaacgcgcaccgcgcaacgtcggtaaaacggcgcgcgagaaagcgaaaaaaggcgat
gcaggcaaaaaaggcggcaagcgttgtcaggtcggtaaaaaggtaaactttgagccagac
agcgccttccgcggtgagaaaaaaacgaagccgaaagcggcgaagaaagacgcgagaaaa
gcgaaaaagccatcggcgaaaacgcagaaaatagccgcagcgaccaaagcgaagcgtgcg
gcgaagaaaaaagtggcagagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (35)   

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