KEGG   Shigella flexneri 301 (serotype 2a): SF4403Help
Entry
SF4403            CDS       T00097                                 

Gene name
holD
Definition
(RefSeq) DNA polymerase III subunit psi
  KO
K02344  DNA polymerase III subunit psi [EC:2.7.7.7]
Organism
sfl  Shigella flexneri 301 (serotype 2a)
Pathway
sfl00230  Purine metabolism
sfl00240  Pyrimidine metabolism
sfl01100  Metabolic pathways
sfl03030  DNA replication
sfl03430  Mismatch repair
sfl03440  Homologous recombination
Module
sfl_M00260  DNA polymerase III complex, bacteria
Brite
KEGG Orthology (KO) [BR:sfl00001]
 Metabolism
  Nucleotide metabolism
   00230 Purine metabolism
    SF4403 (holD)
   00240 Pyrimidine metabolism
    SF4403 (holD)
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    SF4403 (holD)
   03430 Mismatch repair
    SF4403 (holD)
   03440 Homologous recombination
    SF4403 (holD)
Enzymes [BR:sfl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SF4403 (holD)
DNA replication proteins [BR:sfl03032]
 Prokaryotic Type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SF4403 (holD)
DNA repair and recombination proteins [BR:sfl03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   MMR (mismatch exicision repair)
    DNA polymerase III holoenzyme
     SF4403 (holD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_III_psi CSTF_C
Motif
Other DBs
NCBI-GeneID: 1026768
NCBI-ProteinID: NP_710111
UniProt: Q83P08 A0A226K4V3
Position
4574674..4575087
Genome map
AA seq 137 aa AA seqDB search
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIASPAHVRLVMVANDLPALTDPLVSDVLRA
LTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAA
LWQQICTYEHDFFPRND
NT seq 414 nt NT seq  +upstreamnt  +downstreamnt
atgacatcccgacgagactggcagttacagcaactgggcattacccagtggtcgctgcgt
cgccctggcgcgttgcagggggagattgccattgcgagcccggcacacgtccgtctggtg
atggtggcaaacgatcttcccgccctgactgatcctttagtgagcgatgttctgcgcgca
ttaaccgtcagccccgatcaagtgctgcaactgacgccagaaaaaatcgcgatgctgccg
caaggcagtcgctgcaacagctggcggttgggtactgacgaaccgctatcattggaaggc
gctcaggtggcatcaccggcgctcaccgaattacgggcaaacccaacggcacgcgccgcg
ttatggcaacaaatttgcacatatgaacacgatttcttccctcgaaacgactga

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