KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_00022
Entry
SPHFLASMR4Y_00022 CDS       T04949                                 
Symbol
pbpF
Name
(GenBank) penicillin-binding protein 1F
  KO
K05366  penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
Organism
sfla  Sphingorhabdus sp. SMR4y
Pathway
sfla00550  Peptidoglycan biosynthesis
sfla01100  Metabolic pathways
sfla01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    SPHFLASMR4Y_00022 (pbpF)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    SPHFLASMR4Y_00022 (pbpF)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01003 Glycosyltransferases [BR:sfla01003]
    SPHFLASMR4Y_00022 (pbpF)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:sfla01011]
    SPHFLASMR4Y_00022 (pbpF)
Enzymes [BR:sfla01000]
 2. Transferases
  2.4  Glycosyltransferases
   2.4.99  Transferring other glycosyl groups
    2.4.99.28  peptidoglycan glycosyltransferase
     SPHFLASMR4Y_00022 (pbpF)
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     SPHFLASMR4Y_00022 (pbpF)
Glycosyltransferases [BR:sfla01003]
 Polysaccharide
  Bacterial polysaccharide (excluding LPS)
   SPHFLASMR4Y_00022 (pbpF)
Peptidoglycan biosynthesis and degradation proteins [BR:sfla01011]
 Peptidoglycan biosynthesis and degradation
  Glycosyltransferase/DD-Transpeptidase (Class A PBP)
   SPHFLASMR4Y_00022 (pbpF)
SSDB
Motif
Pfam: Transgly Transpeptidase DUF6384
Other DBs
NCBI-ProteinID: ASK86816
UniProt: A0A220W1X6
Position
complement(40805..42922)
AA seq 705 aa
MHDLTSSDPGRRRWYWPFVRRKTAETSFYEPYGDAIPPRIEEPVAPLKKPRGKWWWFSRA
LAAGLLLFILLIAYLAITAPLSKSLQPIAPPQITLLTSDGQPFARNGAVVDDPVEVAKLP
DHLIEAFLAIEDRRFYSHWGVDPRGLGRALWSNISGSGMTQGGSTITQQLAKTTFLTPER
SLTRKAREMLIAFWLEAWLTKDEILERYLSNVYFGDNVYGLRAASLHYYYRQPENLKLEQ
AIMLAGLVQAPSRLAPTRNPDLAAKRARLVKSAMVSAGYLSRQQADRVGIARLDVRAKNS
LPTGTYFADWAMPQARALTDLSYERLALTTTLDSRMQEIARRAVARAPLGQAQVALVAMR
PDGEVVAMIGGKDYAKSAFNRVTQAQRQPGSTFKLFVWLAALRSGMGPNDKVDDSPITKG
GYLPKNSGEKYRGEISLQDAFARSSNVAAVRLFGQIGDKAVIREARNLGVKSPLAEDDPS
LALGTSTMNLLELTAAYAGVAGNRWPVVPYAFKKEEQSWTEWLFDWPGRYNAGIHADMEK
LLRAAVNDGTGRRAMLNIPNYGKTGTSQNNRDALFVGYAGDGDDRLVVGVWIGNDDNTPL
QGVSGGSLPARIWKDFMQQAVQSRKPASRAKPQDKPDPEGPVIPLDLPEIPEIPVEIGDT
ELRINSDSGVRVGTEIGGIPVDLRINGDGVAVERRRQENPAEGER
NT seq 2118 nt   +upstreamnt  +downstreamnt
atgcacgatcttacctcttctgatcccggacgcaggcgctggtactggccgtttgtccgg
agaaagactgctgaaaccagtttctacgaaccctatggcgacgccatcccgccgcgcatt
gaggaaccggttgcgccgctcaagaagccgcgcggcaaatggtggtggttcagccgcgcc
cttgctgccgggctgctgctgttcatcctgctgatcgcctatctcgcgatcaccgcgccc
ctgtccaaatcgctgcaaccgatcgcgccgccgcaaatcacgctgctgacgtcggacgga
cagccgtttgcccgtaacggagcggtcgtcgacgatccggtggaggtcgcaaaattgccc
gaccatctgatagaggccttcctggcgatcgaggaccggcgcttctattcgcactggggc
gtcgatccgcgaggcctgggccgcgcactgtggagcaatatctccggcagcggcatgacc
cagggtggcagcacgatcacccagcagctcgccaaaaccaccttcctgacccccgaacgc
agcctgacccgcaaggcgcgggaaatgctgatcgccttttggctggaagcctggctgacc
aaggacgagatactcgagcgttatttatccaacgtgtatttcggcgacaatgtctacgga
ttgcgcgccgcgtcgctccattattattatcgccagccggaaaatctcaagctggaacag
gcgatcatgctcgccggtctggtgcaggcgccctcgcgtctcgccccgacgcgcaacccc
gatctggccgccaagcgggccagactggtcaaatccgcgatggtcagcgccggctatctc
tcccggcagcaggccgatcgggtcggcatcgccagactcgatgtccgcgccaagaacagc
ctgcccaccggcacctattttgcggactgggccatgccgcaggcccgcgccctcaccgat
ctgagttacgaacggctggcgctgaccaccacgctcgattcccggatgcaggagatcgcc
cgccgcgccgtcgctcgcgcacccttggggcaggcgcaggtcgcgctggtggcaatgcgg
cccgacggagaagtcgtcgccatgatcggcggcaaggattatgcaaaatccgctttcaac
cgcgtcacccaggcgcagcggcagccgggctcgaccttcaagctgttcgtctggctggcg
gcgctgcgttccggcatgggtccgaatgacaaggtcgacgacagcccgatcaccaagggc
ggttatctgccgaaaaattccggtgagaaatatcgcggcgaaataagcctgcaggacgcc
ttcgcccgttcgagcaatgtcgcagccgtgcggcttttcggccagatcggtgacaaggcg
gtcattcgcgaggcccgcaatctgggcgtcaagtcgccgctggccgaggatgatcccagc
ctggcgctcggcacatcgacgatgaacctgctggagctgactgcggcttatgcgggggtc
gccggcaatcgctggccggtcgtcccctatgccttcaagaaggaagagcagagctggacc
gagtggctgttcgactggcccggacgctataatgccggcatccatgcggatatggaaaaa
ttgcttcgggcggcggtcaatgacggcaccggacggcgcgcgatgctgaacatccccaat
tatggcaagaccggcaccagccagaataatcgcgacgccctgttcgtcggctatgccggg
gacggtgatgaccggctggtggtcggcgtgtggatcggcaatgacgacaatacaccgctg
caaggagtcagcggcggcagcctgcccgcccgtatctggaaggacttcatgcagcaggcg
gttcagtcccggaagccggccagccgcgcgaaaccgcaggacaagccggatcccgagggc
ccggttatcccgctcgacctgccggaaatcccggaaataccggtcgagatcggcgatacc
gagctccggataaacagcgatagcggagttcgggtcggtacggaaataggcgggataccg
gtcgatttacggatcaatggcgatggcgtggcggtcgaacggcggcgccaggaaaatccc
gcggagggtgaacgctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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