KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_02166
Entry
SPHFLASMR4Y_02166 CDS       T04949                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sfla  Sphingorhabdus sp. SMR4y
Pathway
sfla03030  DNA replication
sfla03410  Base excision repair
sfla03420  Nucleotide excision repair
sfla03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPHFLASMR4Y_02166 (polA)
   03410 Base excision repair
    SPHFLASMR4Y_02166 (polA)
   03420 Nucleotide excision repair
    SPHFLASMR4Y_02166 (polA)
   03440 Homologous recombination
    SPHFLASMR4Y_02166 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfla03032]
    SPHFLASMR4Y_02166 (polA)
   03400 DNA repair and recombination proteins [BR:sfla03400]
    SPHFLASMR4Y_02166 (polA)
Enzymes [BR:sfla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SPHFLASMR4Y_02166 (polA)
DNA replication proteins [BR:sfla03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SPHFLASMR4Y_02166 (polA)
DNA repair and recombination proteins [BR:sfla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     SPHFLASMR4Y_02166 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SPHFLASMR4Y_02166 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 DprA_N HHH_5 HHH_2 CEP170_C
Other DBs
NCBI-ProteinID: ASK88910
UniProt: A0A220W7V7
Position
complement(2212408..2215212)
AA seq 934 aa
MTDPTDNKSNHLYLVDGSAYIFRAYHRLPPLTNVRGEPVGAVYGYTTMLWKLADELNKAD
GPTHMAVVLDKAGTSFRNDLYDQYKANRPEAPEDLKPQFPMIRDATRAFSLPLIEEENVE
ADDMIASYTKAALAEGWKVTIVSSDKDLMQLIEPDDDSRVDMLDTMKNARMNRATVEEKF
GVGPEKLGDVLGLMGDSSDNIPGVPGIGPKTAFKLINEYGDIESVLAAAPEMKKSKMREN
LIEFADQARLSRELVTLRDDCPLPDTLESFLIQDIPDGPLRAFLADHGFNSLLRKLGGDG
HAEPQDPDVADDSGAPDAAKLPDAPAIDRSQYECVQDIAALDQWIARATAQGVCAVDLET
DSLESVTARIIGVCLATGPNEACYIPLGHGSGDMFGETPEQIGLEDALAKLKPLLEDDAV
LKVGQNLKYDMGVLAQHDISIAPFDDTLVMSFNLDAGLHGHGMDELSKLHLGHECISFKS
LTGTGKKAIGFAEVPLDKATEYGAEDADVTLRLWEILRLRMVPERATRVYQMVDRPLVPV
IAGMEATGVLVDREELARLSKTFAEEMEKLEAEIHELAGESFSIGSPKQLGEILFGKLGL
KGGKKGKSGQYSTDVTVLERLAGDGEPIAQKVVDWRQLAKLKSTYTDALQEQINPGTGRV
HTSYSLSGAQTGRLSSTEPNLQNIPIRTEIGRQIRQAFVAAPGNVILAADYSQIELRLAA
HIADVETLKEAFANGEDIHNRTARELFGAEDRDARARAKTINFAILYGISRWGLAKRLEV
DADEAQAMIDTYFERFPGINQYISRTLQSVREAGYTETLFGRKTWFERIKSPNQAERQGS
ERAAINAPIQGTSADIIKRAMARMLPALAEAGLHDVRMLMQVHDELVFELPEADVEAASA
VIRSVMSGAAEPAVKLSVPLDVDIGTGKSWDEAH
NT seq 2805 nt   +upstreamnt  +downstreamnt
atgacggaccctacagacaacaaatccaaccatctctatctcgttgacggctcggcctat
attttccgcgcctatcaccgcctgccgccgctgaccaatgtccgcggcgaaccggtcggc
gcagtctatggttatacgacaatgttgtggaaactcgccgacgagctgaacaaggccgac
ggcccgactcatatggcggtggtgctggacaaggcggggaccagtttccgcaatgatctc
tatgaccagtataaggccaaccgcccggaagcgccggaggatctgaagccgcaattcccg
atgatccgtgacgctacgcgcgctttttcgctgcccttgatcgaggaagaaaatgtcgag
gccgacgacatgattgcttcctacaccaaggcggcgctggccgagggctggaaggtgacg
atcgtttcgtccgacaaggatctgatgcagctgatcgagcccgatgacgacagccgggtc
gacatgctcgacacgatgaagaacgcccggatgaaccgcgccacggtcgaggagaaattc
ggggtaggaccggagaagctcggcgatgtgctcggcctgatgggcgacagttcggacaat
atcccaggcgtgccgggcatcggaccgaaaaccgcgttcaaactgatcaacgaatatggc
gatatcgaaagcgtactcgccgccgcgccggagatgaaaaaatccaagatgcgcgagaat
ctgatcgaatttgccgatcaggcacggctgtcgcgggagctggtgaccctgcgcgatgat
tgtcccttgcccgacacgctcgaaagtttcctgatccaggatatccccgacgggccgctg
cgcgcatttctggcggatcacgggttcaacagcctgctccgcaaactgggtggcgacggt
catgccgaaccgcaggatcccgatgtcgccgacgatagcggcgctccggatgccgcaaaa
ttgccggacgccccggcgatagaccgtagccaatatgaatgtgtgcaggatatcgccgcg
ctcgaccagtggatcgcgcgtgcaacggcgcagggcgtctgcgcggtcgatctcgagacc
gacagcctcgaaagcgtgaccgcgcggatcatcggcgtctgtctggccactggtcccaac
gaggcctgctacatcccgctcggccacggcagcggcgacatgttcggcgagacaccggag
cagatcggcctcgaggacgcgctggcgaagctaaagccgctgctcgaggatgacgcggtg
ctgaaggttggacagaatctgaaatatgacatgggcgtattggcccagcatgacatcagc
atcgcaccgtttgacgatacgctggtgatgagcttcaatctcgatgccggcctgcacggc
cacggcatggacgaactcagcaagctgcatctcggccatgaatgtatcagcttcaagtcg
ctcaccggcaccggcaagaaggcgatcggctttgccgaagtgccgctcgacaaggcgacc
gaatatggcgcggaggacgccgatgtcacgctccgcctgtgggaaatattgcgcctgcgg
atggtgccggaacgggcgacccgcgtctatcagatggtcgatcggccgctggtgccggtg
attgccgggatggaagcgaccggcgtgctggttgaccgcgaggagctggcgcggctgtcg
aagacatttgccgaggaaatggagaagctggaagcagagatccacgaactggccggcgaa
agcttttccatcggcagccccaagcagctcggcgaaatcctgttcggaaagcttggcctg
aagggcggcaagaagggcaagtcgggccaatattcgaccgatgttaccgtgctcgagcgg
ctggccggtgacggtgagccgatagcgcagaaggtggtcgactggcggcagctggcgaag
ctcaaatccacctataccgatgcgctgcaggagcagatcaatccgggaaccgggcgggtc
cacacctcctatagcctgagcggcgcgcagaccgggcggctgtcctcgaccgaacccaat
ctgcagaatatcccgatccggaccgagatcggccggcagatacggcaggcctttgtcgct
gcgcccggcaatgtcattcttgccgccgactatagccagatcgagctccggctggcggca
catatcgccgatgtcgagacattgaaggaagcgttcgccaatggcgaggacatccataac
cgcaccgcgcgcgaactgttcggtgccgaagaccgcgacgcccgggcgcgtgccaagacg
atcaactttgccatcctctacggcatttcgcgctggggtctggccaagcggctggaggtc
gatgcggatgaagcgcaggcgatgatcgacacctatttcgagcgttttccgggcatcaac
cagtatatttcccggacgctgcaatcggtgcgcgaggccggctataccgagacgctgttc
ggtcgcaagacatggttcgagcggatcaagtcgcccaatcaggcggagcggcagggcagc
gaacgcgccgcgatcaacgccccgatccagggaacgagcgccgatatcatcaagcgcgcg
atggcacgcatgctgcccgcgctggccgaggcggggctgcacgatgtccggatgctgatg
caggtgcacgatgaactggtgttcgaattgcccgaagctgatgtggaggccgccagcgcg
gtgatccggtcggtgatgtcgggcgcggcggaaccggcggtgaaactatcggtgccgctc
gacgtcgatatcggcaccggcaagagctgggacgaggcgcactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (22)   

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