KEGG   Sphingorhabdus sp. SMR4y: SPHFLASMR4Y_02881
Entry
SPHFLASMR4Y_02881 CDS       T04949                                 
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sfla  Sphingorhabdus sp. SMR4y
Pathway
sfla03410  Base excision repair
sfla03430  Mismatch repair
sfla03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sfla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SPHFLASMR4Y_02881 (recJ)
   03430 Mismatch repair
    SPHFLASMR4Y_02881 (recJ)
   03440 Homologous recombination
    SPHFLASMR4Y_02881 (recJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfla03400]
    SPHFLASMR4Y_02881 (recJ)
DNA repair and recombination proteins [BR:sfla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     SPHFLASMR4Y_02881 (recJ)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     SPHFLASMR4Y_02881 (recJ)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SPHFLASMR4Y_02881 (recJ)
SSDB
Motif
Pfam: DHHA1 DHH RecJ_OB
Other DBs
NCBI-ProteinID: ASK89615
UniProt: A0A220W9W6
Position
complement(2947068..2948834)
AA seq 588 aa
MNAVLNVEKSLSGQSWRWRSTSADARDPGFQPDDLVTQLLLARGASRETLAINREPTIRG
FMPDPSVFRDMDAAADRLALAIRNREKVTIFGDYDVDGATSAALLIRLLRDLGLEAGYYI
PDRLMEGYGPSGEALVKLGAQGSNLVVTVDCGAMAFEALDMAHRAGVEVIVVDHHKCAVE
LPKAIALVNPNRLDESDAGAEHGHLAAVGMAFLLGAALVRTLRNQGFFKDRAEPKLLEFL
DIVALGTVADVAQLRGLNRAFVAQGIKVLAGRQNIGLSALIDASRLKRAPICSDLGFALG
PRINAGGRVGKSDLGVRLLITQDPEEAQAIAAELDHLNQERRAIEAHVLEEAEAMCSAQQ
NQAVAVLAAKGWHPGVIGIVAGRIKEKLNRPAIIIALDDEGIGKGSGRSIGGVDLGAAII
AAKDSGLLIAGGGHAMAAGVTVAADKVDAFSEFLNDRLADSVGKAQDGKALLLDAVLSPK
GVNPTMVEAMDGAGPYGMGWPAPRIAIGPVRIIKCDIVGTDHVRMIVGGDDGASIKTIAF
RAAESDLGQTLLNAPRGRKLWIAGRAKIDDWGSRPSAEIHLEDAAWAD
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgaatgcagtattgaatgtagaaaaatccctgtccggccagagctggcgctggcgcagc
accagcgccgacgcgcgcgatccgggtttccagcccgatgatctggtcacccaattgctg
ctcgcgcgcggtgccagccgggaaacgcttgccatcaaccgcgagccgacgatccgcggc
ttcatgcccgatccatcggtcttccgggacatggacgcagccgctgatcgtctcgccctg
gccatcaggaaccgggaaaaggtgacgatattcggcgattatgatgtcgatggcgcgacc
agcgcagcgctgctgatccggctgctgcgcgacctggggctggaagcgggctattatatt
cccgaccgcctgatggaaggctatggcccgtccggcgaggccctggtcaagctgggtgca
cagggcagcaatctggtggtcaccgtggactgcggcgcgatggcctttgaagcgctcgac
atggcgcaccgggccggggtcgaggtcatcgtcgtcgaccatcacaaatgcgcggtggaa
ctgcccaaggcgatcgcactggtcaatccgaaccggctggacgagagcgacgccggcgcc
gaacatggccatctcgccgccgtcgggatggccttcctgcttggcgcggcgctggtccgc
acgttgcgcaatcagggctttttcaaggatcgcgccgaacccaaactattggaatttctg
gatattgtagccctcggcacggtcgccgatgtcgcccagctgcgcggcctcaaccgcgcc
tttgtcgcgcagggcatcaaggttctggcagggcgtcagaatatcggcctgtccgcgctg
atcgacgccagtcggctcaagcgagcaccaatctgttcggatctcggctttgcgctggga
ccgcgaatcaacgccggcggacgggtcggcaaatcggatctcggcgtgcggctgctgatc
acgcaggacccggaagaggcccaggccatcgccgccgagcttgatcatctcaatcaggaa
cggcgcgcgatcgaggcccatgtgctggaggaggccgaagcgatgtgctcggcccagcaa
aaccaggcggtggcggtgcttgccgccaaaggctggcaccccggcgtgatcggcattgta
gccgggcggatcaaggagaagctgaaccggccggcgatcattatcgcgctggacgacgag
ggcatcggcaagggctcgggccgttcgatcggcggcgtcgatctgggcgcggcaatcatt
gcggcaaaggacagcggcctgctgatcgccggtggcggccatgcgatggctgcaggcgtc
accgtcgcagcggacaaggtggatgccttctccgaatttctcaacgaccggctcgccgac
agcgtcggcaaggcgcaggacggcaaggcgctgctgctcgacgcggtgctgtcgccgaag
ggcgtcaacccgacgatggtcgaggcgatggacggagccggtccctatggcatgggctgg
cccgcgccgagaatcgccatcggaccggtgcgaatcatcaaatgcgacatagtcggtacc
gatcatgtccggatgatcgtcggcggcgatgacggcgcatcgatcaagaccattgcgttc
cgcgcggcagagagcgatctcggccagaccctgctcaacgcaccgcgaggacggaaattg
tggatcgccggccgcgccaagatcgacgactggggcagccgcccgtcggcggaaatccat
ctcgaagatgccgcctgggccgattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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