KEGG T00395: Sfri

Shewanella frigidimarina: Sfri_1424

Entry

Sfri_1424 CDS T00395

Gene name

trpA

Definition

tryptophan synthase subunit alpha (EC:4.2.1.20)

Orthology

K01695

tryptophan synthase alpha chain [EC:4.2.1.20]

Organism

sfr Shewanella frigidimarina

Pathway

sfr00260	Glycine, serine and threonine metabolism
sfr00400	Phenylalanine, tyrosine and tryptophan biosynthesis
sfr01100	Metabolic pathways
sfr01110	Biosynthesis of secondary metabolites
sfr01230	Biosynthesis of amino acids

Module

sfr_M00023

Tryptophan biosynthesis, chorismate => tryptophan

Class

Metabolism; Amino acid metabolism; Glycine, serine and threonine metabolism [PATH:sfr00260]
Metabolism; Amino acid metabolism; Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:sfr00400]

SSDB

Motif

Pfam:

Trp_syntA His_biosynth Amidohydro_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Structure

PDB:

3VND

Position

complement(1697930..1698733)

AA seq 267 aa
MSNRYQAKFAALKAQNKGAFVPFVTIGDPSPELSLKIIRTLVDNGADALELGFPFSDPLA
DGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYAKAQ
AAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSR
AGVTGTESKAGEPIENILAQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVK
IIEAHQLDETTLLAKLAEFTAAMKAAT

NT seq 804 nt +upstreamnt +downstreamnt
atgagtaaccgttatcaagcaaaatttgctgcactaaaagcacaaaataaaggtgcattt
gttccttttgtgaccattggcgatccgagccctgaattatcattaaaaattatccggacc
ttagtcgataatggtgctgacgcccttgagttaggctttcctttttcagatccattagcc
gatggccccgttatacaaggtgctaacttacggtcattagcggcaggtacaacttctagt
gattgttttgacatcatcactaaagtccgcgctcaacaccctgatatgcctatcgggtta
ttgctttatgccaacctagtttttgctaatggtattgatgagttttacgctaaagctcaa
gctgctggtgtggattcagtgttgattgctgacgtgcctgttgaggagtctgctcccttt
agtaaagccgccaaagcacatggtattgcacccatctttattgcaccgcccaatgctgat
gctgacaccttaaaaatggtcagtgaacaaggtgaaggttacacctatttgctatcacga
gctggcgtcacgggtacagaatccaaagctggcgagccaattgaaaacattctggcacaa
ctcgccgagtttaatgcgccgccaccactattaggttttggtattgccgagcctgagcaa
gtacgagcagccatcaaggcgggcgctgcaggtgctatttcaggttctgcagtggttaaa
atcattgaagcacatcaacttgatgaaaccacattactggcgaaactggctgaatttacc
gctgcaatgaaagcggcgacataa

All links

Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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