KEGG T00395: Sfri

Shewanella frigidimarina: Sfri_1484

Entry

Sfri_1484 CDS T00395

Definition

DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sfr Shewanella frigidimarina

Pathway

sfr03410	Base excision repair
sfr03420	Nucleotide excision repair
sfr03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sfr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sfr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sfr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_OB_2 DNA_ligase_A_M

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1772930..1773778

AA seq 282 aa
MRKLPYLFILVIISLHCFTIKSEVLSIPPIQLATKYQQDIDVTEYLVSEKLDGVRGYWDG
SNMLTRSGRKVALPSSFTLGFPHTAIDGELWLGRNRFEDISALVRRKQVPDKEWQEVKFM
MFDLPRHSGPFIERYLAMKMLAEQTASIHLQVIKQEPVASTEALFTLLDSIVNAGGEGLM
LHYQQAHYAVGRSEYIVKLKPKYDAEAVVIGHTEGKGKYRGKLGALIVKTPAGVVFNIGS
GLSDKQRENPPLVGSTITYQYLGLTQKGTPRFATFLRQRPPQ

NT seq 849 nt +upstreamnt +downstreamnt
atgcgtaagctaccgtatctttttattttggtcattatttcactgcattgttttacgata
aagagtgaagtgttatcaatacctcctattcagttggcaacaaaatatcaacaagatata
gatgtcactgaatacttagtcagcgagaagcttgatggtgttcgaggctactgggatggc
agtaacatgctgactcgcagtggacgaaaagtggcattaccttcatcgtttacactgggt
tttcctcatacagctattgacggtgaactttggttggggcgtaatcgattcgaagatatt
tcagcattggttcgacgcaagcaagtacccgataaagagtggcaggaagttaagtttatg
atgtttgatttaccgcggcattcaggcccttttattgaacgctacttagcgatgaaaatg
ttggcagaacaaacggcctccatacatttacaggtcattaagcaggagccggtggcttca
actgaagctctgtttacattgcttgattccatcgttaatgctggtggtgaaggattgatg
ttacattatcagcaagcgcattatgcagtcggccgcagtgagtatattgttaagctcaaa
cccaaatatgacgctgaagctgtagtgattggtcatacagaaggtaagggtaagtatcga
ggtaaactaggtgcgttaattgtaaaaacacctgcgggggtagtgtttaatatcggcagt
ggtttaagcgataaacaacgagaaaatccacctttagtcggttctaccattacttatcaa
tatttaggcttaactcaaaaagggacgccaagatttgctacttttctgcgacaaagacca
ccgcaataa

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

Download RDF

DBGET integrated database retrieval system