KEGG T00395: Sfri

Shewanella frigidimarina: Sfri_2535

Entry

Sfri_2535 CDS T00395

Definition

exodeoxyribonuclease V subunit alpha (EC:3.1.11.5)

Orthology

K03581

exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]

Organism

sfr Shewanella frigidimarina

Pathway

sfr03440

Homologous recombination

Class

Genetic Information Processing; Replication and repair; Homologous recombination [PATH:sfr03440]

SSDB

Motif

Pfam:

AAA_30 UvrD_C_2 Viral_helicase1 AAA_19 Helicase_RecD AAA_11 UvrD-helicase AAA_22 DUF2075 AAA_25 UvrD_C AAA_28 PhoH FtsK_SpoIIIE AAA_16 AAA_12 SRP54 ArgK AAA_29 AAA_17 T2SE NTPase_1 AAA_18

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3037089..3039152

AA seq 687 aa
MLILTHPITELLHLWQEQRLITALDRHFAIELASIETINNDPAISEQQPQLFLLVCAMLS
QQLSNQHSCLVIEQIDLANPMAEDNRGNAGINCRIELNHQQLIEQIALFDAVGQPGDNKP
MIFEHGRLYLNKYHFFETQVAAKLTQLANQQIEIDLANSNLPQLIECLFTAEDSNSSQFN
WQKIATATALAKALAVITGGPGTGKTTTVTKLLLLLLTQSPLTIRLVAPTGKAAARLSES
IKASKHRLLQQLTQVSDPALAKVLTDSLKQIPEEASTLHRLLGVIPNSYQFRHHQDNPLR
LDLLVVDEASMVDLPMMYKLLSALPSHGRLILLGDQDQLASVEAGAVLADICVGLKQANQ
HEASPWSMRYSAAQANLIEQLTQQDVSQFIHQQPKIGDSLCMLMHSHRFRGDAGIGLLAN
AVNQSNVHAIRQVWQHDHAELNWFEHQHNAQGDNTGKQALLALSVSAYGEYLSLVQENQQ
RINQQTIIDQADRQDSVITLPHSEQTIIDSFNQYRVLCAMRAGEFGVEGMNIAITDSLKH
AKLINPQNEFYLGRPIIIQSNDYNLGLFNGDIGLILQDSTKPSRLMAHFVMADGSLLKVL
PARLPSHDTCYAMTVHKSQGSEFDKVSFVLPHKPSSAQWQLLSKELLYTAITRAKNHFYC
LGTSMIFEKASKQATSRASGLAWRLWG

NT seq 2064 nt +upstreamnt +downstreamnt
atgctaatactcacccatccaatcactgagttattgcacctttggcaagaacagcggctc
attaccgcactcgatcgtcattttgctatagagctggccagtattgaaaccatcaataac
gatcccgcaattagcgaacaacagccgcaactgttcttgcttgtttgcgccatgcttagc
cagcaattgtcgaatcagcacagttgtttagtcatcgagcaaattgatttagccaatccc
atggcagaagacaaccgcggcaacgctggaatcaattgtcggattgagcttaaccatcaa
caattaattgaacaaatcgcgctatttgatgccgtcggccagcctggtgacaacaaaccg
atgatttttgaacatggacgcttatatttaaataagtaccacttctttgaaactcaagtg
gcggctaagttgacccaattagccaatcaacagattgaaatcgacctagctaacagtaat
ctgccgcaactcattgaatgtttatttaccgcagaagacagcaatagcagccagtttaat
tggcaaaaaatagccacggcaacagccttagccaaagcattagcggtgatcactggtggc
ccaggaaccggtaaaaccaccacagtaactaaactattattgttattgttaacccagtcg
ccactaacaatccgtttagtcgcgcccacaggtaaagctgcagcaaggctgagtgagtcg
atcaaggcgtctaaacatcgtttactgcaacagctaacccaagtcagcgacccagcattg
gcgaaagtattaactgattcgctaaaacaaatacctgaagaagcctcaacattgcatcga
ttattgggggttatcccaaactcgtaccaattcaggcatcatcaggataatccgttgcgc
ttagatttactggtggtcgatgaagcatcgatggtcgacttacccatgatgtacaaatta
ctcagcgccctaccgtctcatggccgtttgatattgttaggcgaccaagatcaactcgca
tcagtagaagctggcgcagtgctggcggatatttgtgttggcttaaaacaagctaatcag
catgaggcatcgccatggtcaatgcgttacagcgcagcacaggcaaatctcattgagcaa
ttaacccaacaagatgtcagtcagtttattcatcaacaacctaaaattggtgacagtttg
tgtatgttgatgcacagccatcgttttagaggcgatgcaggtattgggttattagccaat
gcggttaatcaatcaaatgtgcatgcgattcgccaagtgtggcaacatgatcatgccgaa
ttgaattggtttgagcatcagcataatgcccagggagataacacaggtaaacaagcgtta
ttggcattatcggtaagcgcttatggtgagtatctgagtttggtacaagaaaatcagcaa
aggataaatcaacagaccattatcgatcaagcggatcgacaggacagcgtcataacattg
ccgcattctgaacaaaccatcatcgacagctttaaccaatatcgagtcttgtgtgccatg
cgagctggggagtttggggttgaggggatgaacatcgccatcaccgacagtcttaaacac
gcaaaactgattaatcctcaaaatgagttctatttaggccgaccaatcattattcaaagt
aacgattataacttgggcttatttaatggcgacattggtttaatcttgcaagacagcact
aagccaagtcgcttaatggcccactttgttatggccgatggcagcctgcttaaagtatta
cccgcacgcttaccaagccacgacacttgctacgccatgacagtacataaaagccaaggc
agcgaatttgataaagtcagctttgtcttgccacataaacccagctccgcccaatggcag
ctactcagtaaagaactgctttacaccgccataacacgcgccaaaaatcatttttattgt
ttaggcacgagcatgatatttgaaaaagccagcaaacaagcgacatcacgcgcatcgggg
ttagcgtggagattgtggggttga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SFR (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (23)   
   Pfam (23)   
All databases (33)   

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