KEGG   Shewanella frigidimarina: Sfri_3924Help
Entry
Sfri_3924         CDS       T00395                                 

Definition
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sfr  Shewanella frigidimarina
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:sfr00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Sfri_3924
Enzymes [BR:sfr01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Sfri_3924
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Sfri_3924
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
JGI: 
UniProt: 
Position
4684098..4684913
Genome map
AA seq 271 aa AA seqDB search
MPELPEVEVTRLGISPYLIEQTVSELIVRNASLRWPVPAIAQNIVGQRITNVRRRAKYLL
IDTDAGMTIVHLGMSGSLRILPRNTPIEKHDHIDLVLENGRMLRFNDPRRFGAWLWYELP
EEAHPLLSKLGPEPLSPHFTPLQLQAALAGKKKAIKLCLMDNHIVVGAGNIYANEALFAA
GIHPEAAAGSIDLERLTILVSEVKQILAHAIEQGGTTLKDFTNADGKPGYFAQKLHVYGR
GGETCTACGNLLSEIKLGQRTTVFCGLCQQR
NT seq 816 nt NT seq  +upstreamnt  +downstreamnt
atgcccgaattaccagaagttgaagtgacccgtctagggatcagtccataccttattgag
caaacggtaagtgaattgattgtgcgcaatgcctcacttcgttggcctgtaccggctata
gctcaaaacattgttggtcagcgtattaccaatgtccgcagacgagctaaatacttactc
attgataccgatgcaggaatgacaatcgtgcatttaggcatgtcaggcagcttacgtatt
ttaccgcgcaataccccaatcgaaaaacatgaccatattgatttagtactcgaaaatggg
cgcatgttacgttttaacgatccacgtcgctttggagcttggttatggtatgagttacca
gaagaagcccatccactgctatcaaagcttggcccagaaccactaagccctcattttacg
ccattgcaattgcaagcagcacttgcgggcaagaaaaaggcgattaaactgtgcttaatg
gataatcacatcgtggttggagccggtaatatttacgccaacgaagctttatttgctgcc
gggatccatcctgaagccgcggcgggaagcattgatttagaacggttaacgattctagtc
agcgaggttaagcaaattttggctcacgccattgaacaaggtgggacaacattaaaagat
tttactaatgccgatggtaagcctggatattttgcgcaaaaactacatgtttatggtcgt
ggtggcgaaacctgtacagcctgtggcaatttattaagtgagataaaacttggccaacgt
accacggttttctgtggtttatgccaacagcgttag

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