KEGG   Shewanella frigidimarina: Sfri_3973
Entry
Sfri_3973         CDS       T00395                                 
Name
(GenBank) AMP-dependent synthetase and ligase
  KO
K01897  long-chain acyl-CoA synthetase [EC:6.2.1.3]
Organism
sfr  Shewanella frigidimarina
Pathway
sfr00061  Fatty acid biosynthesis
sfr00071  Fatty acid degradation
sfr01100  Metabolic pathways
sfr01212  Fatty acid metabolism
sfr02024  Quorum sensing
Module
sfr_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:sfr00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    Sfri_3973
   00071 Fatty acid degradation
    Sfri_3973
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Sfri_3973
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:sfr01004]
    Sfri_3973
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sfr04147]
    Sfri_3973
Enzymes [BR:sfr01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     Sfri_3973
Lipid biosynthesis proteins [BR:sfr01004]
 Acyl-CoA synthetase
  Long/very long chain acyl-CoA synthetase
   Sfri_3973
Exosome [BR:sfr04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   Sfri_3973
  Exosomal proteins of breast cancer cells
   Sfri_3973
SSDB
Motif
Pfam: AMP-binding
Other DBs
NCBI-ProteinID: ABI73798
UniProt: Q07W16
Position
complement(4735787..4737580)
AA seq 597 aa
MSLDQYHVVRLLQQQGQSLGDNIALEGFDMPAPWHTVTWGAFDTVTDSVAQLLIEFGLQV
QDKVVILAQNSPQWTCADIGALKARNVVVPVYPTSTIEQAVFIVNDSQAKLIFAGNQQQY
DMACTVAAQAECVQHIVVFDANVTLNADNHVYFDQVLAAQFNPLITNELNTRLANSNLDD
LFTLIYTSGTTGNPKGVMLDYRNFASMIKQHDSELPFTAGDVSLAFLPLSHVFERGWSMY
VLCRGGHNVYLNDTNRIKEALIAVKPHTLCAVPRFLEKIYSAVHDKVGQAPKVRQTLFAW
AMRVGKRQFEVSQGRASGSLWLSAQWKLANKLVYSKLQQVLGGRLKFMPVGGAALDINVA
SFFHSIGVPVLCGYGMTETCATVTCNTLDNRVPGSNGKPLEAMQIKLGKDDEILVRGDTV
MRGYYNRPQDTADAFEDGWLKTGDAGRIDEQGNLYITDRIKELMKTSNGKYIAPQRVEGK
VACCPFIEQVAIVADARNYVSALIVPAFEALNTWAKAQGIHVENPIELLRHSQVVAHFEQ
RLIELQHELAGFEKIKKFTLLHEAFSMESGLITPTLKLRRKMIYSKYHSEINAMYGK
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtcattagatcaataccacgtagttcgactcctgcaacagcaaggtcagtcattaggc
gataatattgcccttgaaggctttgacatgcctgcaccttggcataccgtaacgtggggc
gcatttgatacggttacagactcagtcgcacagttgttaattgagtttggcttacaagtg
caagacaaagtggtgattttagcgcaaaacagtccacagtggacctgtgcagatattggt
gcccttaaagctcgtaatgttgtggtaccggtatatccaaccagcaccatagagcaagcg
gtattcattgttaacgactctcaagctaaattaatttttgctggtaaccaacagcaatac
gacatggcttgcacagtggcagcccaagctgagtgcgtgcaacacattgtagtctttgat
gctaacgttacccttaatgccgataatcatgtgtattttgatcaagtattagcggcgcaa
tttaatccgctgattaccaatgagctcaatactagactagccaatagcaatttagacgac
ttatttacgcttatttatacctctggcaccaccggcaatcctaaaggtgtgatgctcgac
taccgtaattttgcctcgatgattaaacagcatgacagtgagttgccatttactgcgggt
gatgtgtcgctggcctttttaccgcttagccatgtattcgagcgtggttggagcatgtat
gtattatgtcgcggtggccacaatgtgtatttaaacgacacgaatcgaatcaaagaagcc
cttattgcggttaaaccacataccttgtgtgctgtgccgcgatttttagaaaaaatttac
agcgctgtgcacgataaagtcggccaagcgcctaaagtgagacaaacattatttgcttgg
gcgatgcgagtaggtaaacgccaatttgaagttagccaaggtcgtgcttcaggaagtttg
tggttaagtgcacagtggaagctggctaacaagctggtttacagcaaattacagcaagtg
ttgggtggtcggttaaagttcatgcccgtgggcggtgcagcgctcgatattaatgtggcc
agcttttttcacagtataggtgtaccggtattgtgtgggtatggcatgacagaaacctgc
gctacggtaacctgtaatactttagataatcgtgtaccaggttcaaacggtaagccacta
gaagctatgcaaatcaagcttggcaaagacgatgaaatcttagtgcgtggcgacactgtg
atgcgcggttattacaatcgcccccaagataccgccgacgcctttgaagacggttggtta
aaaaccggtgatgcagggcggattgatgagcaaggtaacttgtatattaccgatcgcatt
aaagagttaatgaaaacttcaaacggtaaatacatcgcaccacagcgtgttgaaggtaag
gtggcttgttgcccgtttatcgaacaagtcgccattgttgccgatgcgcgcaattatgta
tctgctctaattgtgccagcatttgaagcattaaatacttgggctaaagcgcaaggtatt
catgttgaaaacccaattgagttgttacgtcactcacaagtggtggctcatttcgagcag
cgattaatcgagttgcaacatgagctagctgggtttgaaaaaatcaaaaaattcacctta
ttacatgaagcattttcgatggaatctggactcattacgccgacattaaagctacgtcgt
aaaatgatttacagcaaatatcacagtgaaattaatgccatgtatggcaagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (6)   
   KEGG PATHWAY (5)   
   KEGG MODULE (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (27)   

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