KEGG   Shigella flexneri 8401 (serotype 5b): SFV_3883
Entry
SFV_3883          CDS       T00377                                 
Symbol
yicF
Name
(GenBank) putative enzyme
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sfv  Shigella flexneri 8401 (serotype 5b)
Pathway
sfv03030  DNA replication
sfv03410  Base excision repair
sfv03420  Nucleotide excision repair
sfv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sfv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SFV_3883 (yicF)
   03410 Base excision repair
    SFV_3883 (yicF)
   03420 Nucleotide excision repair
    SFV_3883 (yicF)
   03430 Mismatch repair
    SFV_3883 (yicF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfv03032]
    SFV_3883 (yicF)
   03400 DNA repair and recombination proteins [BR:sfv03400]
    SFV_3883 (yicF)
Enzymes [BR:sfv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SFV_3883 (yicF)
DNA replication proteins [BR:sfv03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SFV_3883 (yicF)
DNA repair and recombination proteins [BR:sfv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SFV_3883 (yicF)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SFV_3883 (yicF)
   MMR (mismatch excision repair)
    DNA ligase
     SFV_3883 (yicF)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SFV_3883 (yicF)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: ABF05891
UniProt: Q0SYH4
Position
3986894..3988582
AA seq 562 aa
MKMKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVED
GVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSD
LWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQ
GEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDRLKE
LATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPGQAE
WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWD
IAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFISRLV
WLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFN
LARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWK
ENAQIKKLGSWLAAQQITGFEP
NT seq 1689 nt   +upstreamnt  +downstreamnt
gtgaagatgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtg
tgggcggtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaa
cagcaaataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagac
ggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgtgagcgag
ccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacg
ggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaacgtagcgat
ctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaa
ctgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagtt
agcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcag
ggggaaatatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcc
cgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgacacgctaaactcactg
gctgtttttgtctgggcatggccggatggaccgcagttaatgaccgatcgtttaaaggag
ctggctaccgcaggttttactctaacgcagaggtatacccgtgcggttaaaaatgctgat
gaggttgcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtcaccgatggc
gtggttgtgcgaggggctaaggaacccgaatcccgtcattggctaccgggccaggcggag
tggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcag
tttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctg
gatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggat
attgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcctcgcattgat
gatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaaccgctttaac
ccgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtc
tggctggggtcaaaacaggttctggggctggatggcattggtgaggccggttggcgcgcg
ctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaa
ttacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaat
ctggctcgtaaccagccttttactcgctgggtgatggcaatgggaataccgctaacccgg
gcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcag
ttctggcagcagctgccggggactggatctgggcgcgccagacaggttattgaatggaag
gaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggtttt
gaaccttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (24)   

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