KEGG   Streptococcus agalactiae GD201008-001 (serotype Ia): A964_1394
Entry
A964_1394         CDS       T02248                                 
Symbol
vacB
Name
(GenBank) VacB/Rnb family exoribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sgc  Streptococcus agalactiae GD201008-001 (serotype Ia)
Pathway
sgc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sgc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A964_1394 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sgc03019]
    A964_1394 (vacB)
   03016 Transfer RNA biogenesis [BR:sgc03016]
    A964_1394 (vacB)
Enzymes [BR:sgc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     A964_1394 (vacB)
Messenger RNA biogenesis [BR:sgc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     A964_1394 (vacB)
Transfer RNA biogenesis [BR:sgc03016]
 Prokaryotic type
  tRNA degradation factors
   A964_1394 (vacB)
SSDB
Motif
Pfam: RNB OB_RNB S1 CSD2 HTH_DeoR HTH_24 HTH_5 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AFS46159
Position
complement(1449977..1452382)
AA seq 801 aa
MKEKIIKYLEEHGKTSVNDLAAALDMAGAKAFPKLIKTISNLESHRQLRFDDNGSLSLQK
KEAKKKEITVRGLFRANKAGFGFLSIDQDEDDMFIGKNDIAYAIDGDTVEAVVKKPADRL
NGTAAEARVVNIVERSLKTLVGKFVLDDERPKYAGYIKSKNQKINQKIYIRKEPVVLDGT
EIIKVDIDKYPTRGHDYFVASVRDIVGHQGDVGIDVLEVLESMDIVSEFPEDVIAEANAI
PDAPTEKDLIGRVDLRQEVTFTIDGADAKDLDDAVHIKLLDNGHFELGVHIADVSYYVTE
GSALNREALSRGTSVYVTDRVVPMLPERLSNGICSLNPNLDRLTQSCIMEIDQNGRVVNH
QITQSVINTTYRMTYTAVNDIIAGDEEICSEYESIVSSVQHMVTLHHTLEAMRTRRGALN
FDTSEAKIMVNDKGMPVDIVIRNRGIAERMIESFMLAANETVAEHYARLKLPFIYRIHEE
PKAEKLQKFIDYASVFGVQIQGTATKITQSALQDFMKKVQGQPGSEVLSMMLLRSMQQAR
YSEHNHGHYGLAAEYYTHFTSPIRRYPDLLVHRMIRDYDDKAMDKADHFANLIPEIATQT
SSLERRAIDAERIVEAMKKAEYMEEYVGEEFEGVVASVVKFGMFVELPNTIEGLIHVTTL
PEYYHFNERTLTLQGEKSGKVFRVGQQIKVKLIRSDKETGDIDFDYLPSDFDIVEKVSKS
SREGRPNRSSKREHQHRISDRDNKNKNTSKKKASRKPKRNSDSKSHHHKDDRTTGSTKKK
TKKPFYKGVAKKGQKRKSKKG
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgaaagaaaaaattataaaatatttggaagaacacggtaaaaccagcgttaatgattta
gctgctgccctagatatggcaggcgcaaaagcatttccaaaattaatcaaaacaatctca
aatttggagagccacaggcaattaagatttgacgataatggaagtctttctcttcaaaag
aaagaagctaagaaaaaggaaatcacagtaaggggtctttttagagcaaataaagcagga
tttggttttcttagtattgaccaagacgaagatgatatgtttatcggaaaaaacgatatt
gcttatgctattgatggtgacacggtagaagctgttgtaaagaaaccagcggaccgtctt
aacgggactgcagcagaagcgcgtgttgttaatattgttgaacgtagtttaaagacgctt
gttggtaagtttgtcttagacgatgagcgccctaaatacgcaggatatatcaaatcgaaa
aatcaaaaaatcaatcaaaagatttatatacgcaaagaaccggtcgttttagacggaaca
gaaattatcaaagtagatattgataaatatccgacacgaggacatgattacttcgtagca
agtgttcgtgatatcgttggacatcaaggagatgttggtattgatgttttagaagtcttg
gaaagtatggatatcgtctcagaatttcctgaggacgttattgcagaagccaatgctatc
ccagatgctccaacggagaaagatttaattgggcgtgttgatttacgtcaagaggtcact
ttcactattgatggagcggacgccaaagatttagacgatgctgtgcatattaaattactg
gataatggtcattttgaacttggagttcatatcgcagatgtatcatactacgttactgaa
ggctctgccttaaatcgtgaagcacttagtcgtggtacgtccgtatatgtcacagatcgc
gttgtaccaatgttaccagagcgtctatctaacggtatatgttcattaaatccaaatctt
gatcgtttaacgcagtcttgtattatggaaattgaccaaaatgggagagttgttaatcat
caaattacacagtcagtgattaataccacttatcgtatgacttataccgctgtaaatgat
attattgctggcgatgaggaaatctgctcagaatatgagtctattgtgtcctcagtacag
catatggtcactttacaccatactttggaagctatgcgtacgcgtcgtggagcgctgaat
tttgacacatctgaagcaaaaattatggttaatgataagggaatgccagttgatattgtt
attcgcaacagaggcattgctgaacgcatgattgagtcatttatgttggcggcaaatgaa
acggttgctgaacattatgctcgtctaaaactgccatttatttatcgtatacacgaagag
cctaaagctgaaaaattacaaaaattcatcgattatgcttctgttttcggtgttcagatt
caaggaacagcaactaaaatcacccaatctgctttacaggactttatgaaaaaagtacaa
gggcagccaggaagtgaagtgttatctatgatgttattgcgctcgatgcaacaagctaga
tattctgaacacaaccatggacattatggacttgctgcggaatattacactcactttact
agccccattcgacgttatccagacttgttagttcatcgtatgattcgtgattatgatgat
aaagcgatggataaagctgatcattttgctaaccttatcccagaaattgcaactcaaacg
tctagtcttgagagacgtgccattgatgctgaacgtattgtagaggcaatgaagaaagcc
gaatatatggaagaatatgttggtgaggaatttgaaggtgtggttgcaagcgttgttaaa
tttggtatgtttgtagaattaccaaatactattgaaggattgattcacgtaacgaccttg
cctgaatattatcactttaatgaacgtacgctgacgcttcaaggtgagaaatctgggaaa
gttttccgtgttggtcaacaaattaaggttaagttgattcgttctgataaggaaactggt
gatatcgattttgattatttaccatcagattttgatattgttgaaaaggtaagtaaaagt
tcgcgtgagggtcgtcctaatagaagttctaaacgagaacatcagcatagaatttctgat
cgtgataataagaataaaaatacatctaagaaaaaagcatctcgaaaacccaaaaggaac
tcggatagcaaatcacatcatcataaagacgatagaacaacaggttcaaccaagaaaaaa
acgaaaaaacctttctataaaggcgttgctaagaaaggtcagaaacggaaatctaagaaa
ggttaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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